Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11285

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11275 and BWI76_RS11280 overlap by 4 nucleotidesBWI76_RS11280 and BWI76_RS11285 are separated by 84 nucleotidesBWI76_RS11285 and BWI76_RS11290 are separated by 100 nucleotides BWI76_RS11275: BWI76_RS11275 - sensor protein PhoQ, at 2,377,821 to 2,379,287 _RS11275 BWI76_RS11280: BWI76_RS11280 - two-component system response regulator PhoP, at 2,379,284 to 2,379,958 _RS11280 BWI76_RS11285: BWI76_RS11285 - transcriptional regulator, at 2,380,043 to 2,380,489 _RS11285 BWI76_RS11290: BWI76_RS11290 - MFS transporter, at 2,380,590 to 2,381,819 _RS11290 Position (kb) 2380 2381Strain fitness (log2 ratio) -1 0 1 2at 2379.106 kb on + strand, within BWI76_RS11275at 2379.930 kb on + strandat 2380.386 kb on - strand, within BWI76_RS11285at 2380.818 kb on + strand, within BWI76_RS11290at 2380.884 kb on - strand, within BWI76_RS11290at 2381.047 kb on - strand, within BWI76_RS11290at 2381.123 kb on - strand, within BWI76_RS11290at 2381.207 kb on - strand, within BWI76_RS11290at 2381.207 kb on - strand, within BWI76_RS11290

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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2,379,106 + BWI76_RS11275 0.88 +0.3
2,379,930 + -0.1
2,380,386 - BWI76_RS11285 0.77 +1.8
2,380,818 + BWI76_RS11290 0.19 +0.8
2,380,884 - BWI76_RS11290 0.24 -0.9
2,381,047 - BWI76_RS11290 0.37 +0.1
2,381,123 - BWI76_RS11290 0.43 +0.6
2,381,207 - BWI76_RS11290 0.50 +0.0
2,381,207 - BWI76_RS11290 0.50 -0.0

Or see this region's nucleotide sequence