Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10015

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10010 and BWI76_RS10015 are separated by 170 nucleotidesBWI76_RS10015 and BWI76_RS10020 overlap by 4 nucleotides BWI76_RS10010: BWI76_RS10010 - hypothetical protein, at 2,107,664 to 2,118,601 _RS10010 BWI76_RS10015: BWI76_RS10015 - putative outer membrane efflux protein, at 2,118,772 to 2,120,208 _RS10015 BWI76_RS10020: BWI76_RS10020 - ABC transporter, at 2,120,205 to 2,122,352 _RS10020 Position (kb) 2118 2119 2120 2121Strain fitness (log2 ratio) -2 -1 0 1 2at 2117.927 kb on + strandat 2117.927 kb on + strandat 2118.005 kb on + strandat 2118.021 kb on + strandat 2118.035 kb on - strandat 2118.067 kb on - strandat 2118.116 kb on + strandat 2118.450 kb on + strandat 2118.450 kb on - strandat 2118.455 kb on + strandat 2118.455 kb on + strandat 2118.455 kb on + strandat 2118.455 kb on + strandat 2118.456 kb on - strandat 2118.458 kb on - strandat 2118.463 kb on - strandat 2118.482 kb on + strandat 2118.492 kb on - strandat 2118.597 kb on + strandat 2118.605 kb on + strandat 2118.608 kb on + strandat 2118.622 kb on + strandat 2118.627 kb on + strandat 2118.659 kb on + strandat 2118.689 kb on + strandat 2118.799 kb on + strandat 2118.807 kb on - strandat 2118.810 kb on + strandat 2118.825 kb on + strandat 2118.825 kb on + strandat 2118.874 kb on - strandat 2118.928 kb on + strand, within BWI76_RS10015at 2118.936 kb on - strand, within BWI76_RS10015at 2119.028 kb on + strand, within BWI76_RS10015at 2119.028 kb on + strand, within BWI76_RS10015at 2119.028 kb on - strand, within BWI76_RS10015at 2119.045 kb on + strand, within BWI76_RS10015at 2119.046 kb on - strandat 2119.047 kb on + strand, within BWI76_RS10015at 2119.047 kb on + strand, within BWI76_RS10015at 2119.098 kb on + strand, within BWI76_RS10015at 2119.116 kb on - strand, within BWI76_RS10015at 2119.120 kb on + strand, within BWI76_RS10015at 2119.148 kb on + strandat 2119.186 kb on + strand, within BWI76_RS10015at 2119.214 kb on - strand, within BWI76_RS10015at 2119.251 kb on + strand, within BWI76_RS10015at 2119.635 kb on + strand, within BWI76_RS10015at 2120.046 kb on + strand, within BWI76_RS10015at 2120.546 kb on - strand, within BWI76_RS10020at 2120.776 kb on + strand, within BWI76_RS10020at 2120.777 kb on + strand, within BWI76_RS10020at 2120.792 kb on + strand, within BWI76_RS10020at 2120.884 kb on - strand, within BWI76_RS10020at 2120.925 kb on + strand, within BWI76_RS10020at 2121.009 kb on - strand, within BWI76_RS10020at 2121.036 kb on - strand, within BWI76_RS10020at 2121.115 kb on + strand, within BWI76_RS10020

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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2,117,927 + -0.4
2,117,927 + -0.2
2,118,005 + +0.0
2,118,021 + -0.1
2,118,035 - +1.8
2,118,067 - -0.0
2,118,116 + -1.1
2,118,450 + -0.0
2,118,450 - -1.0
2,118,455 + +0.4
2,118,455 + -2.5
2,118,455 + +0.9
2,118,455 + -0.8
2,118,456 - +0.3
2,118,458 - +1.6
2,118,463 - +1.2
2,118,482 + +0.7
2,118,492 - +0.0
2,118,597 + -0.6
2,118,605 + +1.1
2,118,608 + +0.2
2,118,622 + +0.2
2,118,627 + +0.1
2,118,659 + -0.4
2,118,689 + -0.2
2,118,799 + +0.7
2,118,807 - -0.4
2,118,810 + -1.0
2,118,825 + +1.6
2,118,825 + +0.6
2,118,874 - -0.4
2,118,928 + BWI76_RS10015 0.11 -1.8
2,118,936 - BWI76_RS10015 0.11 -1.8
2,119,028 + BWI76_RS10015 0.18 -1.0
2,119,028 + BWI76_RS10015 0.18 -0.8
2,119,028 - BWI76_RS10015 0.18 -2.0
2,119,045 + BWI76_RS10015 0.19 -0.3
2,119,046 - +1.0
2,119,047 + BWI76_RS10015 0.19 -1.8
2,119,047 + BWI76_RS10015 0.19 -0.6
2,119,098 + BWI76_RS10015 0.23 +0.6
2,119,116 - BWI76_RS10015 0.24 -0.3
2,119,120 + BWI76_RS10015 0.24 -0.6
2,119,148 + -0.0
2,119,186 + BWI76_RS10015 0.29 -0.3
2,119,214 - BWI76_RS10015 0.31 -0.2
2,119,251 + BWI76_RS10015 0.33 -1.0
2,119,635 + BWI76_RS10015 0.60 +0.5
2,120,046 + BWI76_RS10015 0.89 -1.4
2,120,546 - BWI76_RS10020 0.16 +1.8
2,120,776 + BWI76_RS10020 0.27 -0.5
2,120,777 + BWI76_RS10020 0.27 +0.1
2,120,792 + BWI76_RS10020 0.27 +0.6
2,120,884 - BWI76_RS10020 0.32 +0.2
2,120,925 + BWI76_RS10020 0.34 +0.1
2,121,009 - BWI76_RS10020 0.37 +0.6
2,121,036 - BWI76_RS10020 0.39 +0.2
2,121,115 + BWI76_RS10020 0.42 +0.3

Or see this region's nucleotide sequence