Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10010 and BWI76_RS10015 are separated by 170 nucleotides BWI76_RS10015 and BWI76_RS10020 overlap by 4 nucleotides
BWI76_RS10010: BWI76_RS10010 - hypothetical protein, at 2,107,664 to 2,118,601
_RS10010
BWI76_RS10015: BWI76_RS10015 - putative outer membrane efflux protein, at 2,118,772 to 2,120,208
_RS10015
BWI76_RS10020: BWI76_RS10020 - ABC transporter, at 2,120,205 to 2,122,352
_RS10020
Position (kb)
2118
2119
2120
2121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2117.927 kb on + strand at 2117.927 kb on + strand at 2118.005 kb on + strand at 2118.021 kb on + strand at 2118.035 kb on - strand at 2118.067 kb on - strand at 2118.116 kb on + strand at 2118.450 kb on + strand at 2118.450 kb on - strand at 2118.455 kb on + strand at 2118.455 kb on + strand at 2118.455 kb on + strand at 2118.455 kb on + strand at 2118.456 kb on - strand at 2118.458 kb on - strand at 2118.463 kb on - strand at 2118.482 kb on + strand at 2118.492 kb on - strand at 2118.597 kb on + strand at 2118.605 kb on + strand at 2118.608 kb on + strand at 2118.622 kb on + strand at 2118.627 kb on + strand at 2118.659 kb on + strand at 2118.689 kb on + strand at 2118.799 kb on + strand at 2118.807 kb on - strand at 2118.810 kb on + strand at 2118.825 kb on + strand at 2118.825 kb on + strand at 2118.874 kb on - strand at 2118.928 kb on + strand, within BWI76_RS10015 at 2118.936 kb on - strand, within BWI76_RS10015 at 2119.028 kb on + strand, within BWI76_RS10015 at 2119.028 kb on + strand, within BWI76_RS10015 at 2119.028 kb on - strand, within BWI76_RS10015 at 2119.045 kb on + strand, within BWI76_RS10015 at 2119.046 kb on - strand at 2119.047 kb on + strand, within BWI76_RS10015 at 2119.047 kb on + strand, within BWI76_RS10015 at 2119.098 kb on + strand, within BWI76_RS10015 at 2119.116 kb on - strand, within BWI76_RS10015 at 2119.120 kb on + strand, within BWI76_RS10015 at 2119.148 kb on + strand at 2119.186 kb on + strand, within BWI76_RS10015 at 2119.214 kb on - strand, within BWI76_RS10015 at 2119.251 kb on + strand, within BWI76_RS10015 at 2119.635 kb on + strand, within BWI76_RS10015 at 2120.046 kb on + strand, within BWI76_RS10015 at 2120.546 kb on - strand, within BWI76_RS10020 at 2120.776 kb on + strand, within BWI76_RS10020 at 2120.777 kb on + strand, within BWI76_RS10020 at 2120.792 kb on + strand, within BWI76_RS10020 at 2120.884 kb on - strand, within BWI76_RS10020 at 2120.925 kb on + strand, within BWI76_RS10020 at 2121.009 kb on - strand, within BWI76_RS10020 at 2121.036 kb on - strand, within BWI76_RS10020 at 2121.115 kb on + strand, within BWI76_RS10020
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 2,117,927 + -0.4 2,117,927 + -0.2 2,118,005 + +0.0 2,118,021 + -0.1 2,118,035 - +1.8 2,118,067 - -0.0 2,118,116 + -1.1 2,118,450 + -0.0 2,118,450 - -1.0 2,118,455 + +0.4 2,118,455 + -2.5 2,118,455 + +0.9 2,118,455 + -0.8 2,118,456 - +0.3 2,118,458 - +1.6 2,118,463 - +1.2 2,118,482 + +0.7 2,118,492 - +0.0 2,118,597 + -0.6 2,118,605 + +1.1 2,118,608 + +0.2 2,118,622 + +0.2 2,118,627 + +0.1 2,118,659 + -0.4 2,118,689 + -0.2 2,118,799 + +0.7 2,118,807 - -0.4 2,118,810 + -1.0 2,118,825 + +1.6 2,118,825 + +0.6 2,118,874 - -0.4 2,118,928 + BWI76_RS10015 0.11 -1.8 2,118,936 - BWI76_RS10015 0.11 -1.8 2,119,028 + BWI76_RS10015 0.18 -1.0 2,119,028 + BWI76_RS10015 0.18 -0.8 2,119,028 - BWI76_RS10015 0.18 -2.0 2,119,045 + BWI76_RS10015 0.19 -0.3 2,119,046 - +1.0 2,119,047 + BWI76_RS10015 0.19 -1.8 2,119,047 + BWI76_RS10015 0.19 -0.6 2,119,098 + BWI76_RS10015 0.23 +0.6 2,119,116 - BWI76_RS10015 0.24 -0.3 2,119,120 + BWI76_RS10015 0.24 -0.6 2,119,148 + -0.0 2,119,186 + BWI76_RS10015 0.29 -0.3 2,119,214 - BWI76_RS10015 0.31 -0.2 2,119,251 + BWI76_RS10015 0.33 -1.0 2,119,635 + BWI76_RS10015 0.60 +0.5 2,120,046 + BWI76_RS10015 0.89 -1.4 2,120,546 - BWI76_RS10020 0.16 +1.8 2,120,776 + BWI76_RS10020 0.27 -0.5 2,120,777 + BWI76_RS10020 0.27 +0.1 2,120,792 + BWI76_RS10020 0.27 +0.6 2,120,884 - BWI76_RS10020 0.32 +0.2 2,120,925 + BWI76_RS10020 0.34 +0.1 2,121,009 - BWI76_RS10020 0.37 +0.6 2,121,036 - BWI76_RS10020 0.39 +0.2 2,121,115 + BWI76_RS10020 0.42 +0.3
Or see this region's nucleotide sequence