Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07295 and BWI76_RS07300 overlap by 4 nucleotides BWI76_RS07300 and BWI76_RS07305 are separated by 146 nucleotides BWI76_RS07305 and BWI76_RS07310 are separated by 30 nucleotides
BWI76_RS07295: BWI76_RS07295 - 6-phospho-beta-glucosidase, at 1,535,676 to 1,537,100
_RS07295
BWI76_RS07300: BWI76_RS07300 - antitermination protein BlgG, at 1,537,097 to 1,537,936
_RS07300
BWI76_RS07305: BWI76_RS07305 - sucrose operon repressor, at 1,538,083 to 1,539,087
_RS07305
BWI76_RS07310: BWI76_RS07310 - sucrose-6-phosphate hydrolase, at 1,539,118 to 1,540,518
_RS07310
Position (kb)
1538
1539
1540 Strain fitness (log2 ratio)
-2
-1
0
1 at 1537.184 kb on + strand, within BWI76_RS07300 at 1537.280 kb on - strand, within BWI76_RS07300 at 1537.280 kb on - strand, within BWI76_RS07300 at 1537.377 kb on + strand, within BWI76_RS07300 at 1537.588 kb on + strand, within BWI76_RS07300 at 1537.658 kb on + strand, within BWI76_RS07300 at 1537.665 kb on + strand, within BWI76_RS07300 at 1537.732 kb on + strand, within BWI76_RS07300 at 1537.863 kb on + strand at 1537.899 kb on + strand at 1537.949 kb on - strand at 1538.138 kb on - strand at 1538.412 kb on - strand, within BWI76_RS07305 at 1538.461 kb on + strand, within BWI76_RS07305 at 1538.597 kb on + strand, within BWI76_RS07305 at 1538.667 kb on + strand, within BWI76_RS07305 at 1538.667 kb on + strand, within BWI76_RS07305 at 1538.801 kb on - strand, within BWI76_RS07305 at 1538.907 kb on + strand, within BWI76_RS07305 at 1538.951 kb on + strand, within BWI76_RS07305 at 1538.999 kb on - strand at 1539.827 kb on + strand, within BWI76_RS07310 at 1539.831 kb on - strand, within BWI76_RS07310 at 1539.855 kb on + strand, within BWI76_RS07310 at 1539.958 kb on - strand, within BWI76_RS07310
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 1,537,184 + BWI76_RS07300 0.10 -0.4 1,537,280 - BWI76_RS07300 0.22 -1.1 1,537,280 - BWI76_RS07300 0.22 +0.1 1,537,377 + BWI76_RS07300 0.33 -0.3 1,537,588 + BWI76_RS07300 0.58 +0.3 1,537,658 + BWI76_RS07300 0.67 +0.1 1,537,665 + BWI76_RS07300 0.68 +0.5 1,537,732 + BWI76_RS07300 0.76 +0.6 1,537,863 + -0.2 1,537,899 + +0.1 1,537,949 - +0.5 1,538,138 - +0.7 1,538,412 - BWI76_RS07305 0.33 +1.7 1,538,461 + BWI76_RS07305 0.38 +1.2 1,538,597 + BWI76_RS07305 0.51 +1.7 1,538,667 + BWI76_RS07305 0.58 +1.3 1,538,667 + BWI76_RS07305 0.58 +1.4 1,538,801 - BWI76_RS07305 0.71 +1.2 1,538,907 + BWI76_RS07305 0.82 -1.9 1,538,951 + BWI76_RS07305 0.86 +1.0 1,538,999 - +0.5 1,539,827 + BWI76_RS07310 0.51 -0.6 1,539,831 - BWI76_RS07310 0.51 +0.3 1,539,855 + BWI76_RS07310 0.53 +0.6 1,539,958 - BWI76_RS07310 0.60 +0.4
Or see this region's nucleotide sequence