Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02935 and BWI76_RS02940 are separated by 369 nucleotides BWI76_RS02940 and BWI76_RS02945 are separated by 260 nucleotides BWI76_RS02945 and BWI76_RS02950 are separated by 79 nucleotides
BWI76_RS02935: BWI76_RS02935 - anaerobic ribonucleoside triphosphate reductase, at 598,863 to 601,001
_RS02935
BWI76_RS02940: BWI76_RS02940 - RpiR family transcriptional regulator, at 601,371 to 602,114
_RS02940
BWI76_RS02945: BWI76_RS02945 - PTS sugar transporter subunit IIB, at 602,375 to 602,683
_RS02945
BWI76_RS02950: BWI76_RS02950 - 6-phospho-beta-glucosidase, at 602,763 to 604,070
_RS02950
Position (kb) 601
602
603 Strain fitness (log2 ratio) -1
0
1
2
3 at 600.406 kb on - strand, within BWI76_RS02935 at 600.580 kb on + strand, within BWI76_RS02935 at 600.620 kb on + strand, within BWI76_RS02935 at 600.620 kb on + strand, within BWI76_RS02935 at 600.670 kb on + strand, within BWI76_RS02935 at 600.678 kb on - strand, within BWI76_RS02935 at 600.755 kb on - strand, within BWI76_RS02935 at 600.997 kb on + strand at 600.997 kb on - strand at 601.009 kb on + strand at 601.049 kb on - strand at 601.115 kb on + strand at 601.156 kb on - strand at 601.285 kb on - strand at 601.395 kb on - strand at 601.442 kb on - strand at 601.446 kb on - strand, within BWI76_RS02940 at 601.535 kb on + strand, within BWI76_RS02940 at 601.699 kb on + strand, within BWI76_RS02940 at 601.887 kb on - strand, within BWI76_RS02940 at 602.079 kb on + strand at 602.344 kb on - strand at 602.382 kb on + strand at 602.390 kb on - strand at 602.575 kb on + strand at 602.669 kb on + strand at 602.731 kb on + strand at 602.811 kb on - strand at 602.811 kb on - strand at 602.827 kb on + strand at 602.827 kb on + strand at 602.835 kb on - strand at 602.927 kb on + strand, within BWI76_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 600,406 - BWI76_RS02935 0.72 +0.3 600,580 + BWI76_RS02935 0.80 -0.9 600,620 + BWI76_RS02935 0.82 -0.1 600,620 + BWI76_RS02935 0.82 +0.2 600,670 + BWI76_RS02935 0.84 +0.7 600,678 - BWI76_RS02935 0.85 -0.3 600,755 - BWI76_RS02935 0.88 +1.7 600,997 + +3.6 600,997 - +0.8 601,009 + -0.0 601,049 - -0.1 601,115 + -1.3 601,156 - +0.3 601,285 - -1.0 601,395 - -0.2 601,442 - +0.2 601,446 - BWI76_RS02940 0.10 +1.6 601,535 + BWI76_RS02940 0.22 +1.0 601,699 + BWI76_RS02940 0.44 -0.1 601,887 - BWI76_RS02940 0.69 +0.6 602,079 + +0.3 602,344 - -0.1 602,382 + +0.5 602,390 - +0.2 602,575 + -0.6 602,669 + -0.9 602,731 + +0.2 602,811 - -1.0 602,811 - +0.7 602,827 + +0.2 602,827 + +1.0 602,835 - +0.5 602,927 + BWI76_RS02950 0.13 +0.2
Or see this region's nucleotide sequence