Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23985

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23980 and BWI76_RS23985 are separated by 51 nucleotidesBWI76_RS23985 and BWI76_RS23990 are separated by 377 nucleotidesBWI76_RS23990 and BWI76_RS23995 are separated by 24 nucleotides BWI76_RS23980: BWI76_RS23980 - phosphoglycerate kinase, at 5,005,248 to 5,006,411 _RS23980 BWI76_RS23985: BWI76_RS23985 - erythrose-4-phosphate dehydrogenase, at 5,006,463 to 5,007,482 _RS23985 BWI76_RS23990: BWI76_RS23990 - DNA-binding protein, at 5,007,860 to 5,008,285 _RS23990 BWI76_RS23995: BWI76_RS23995 - hypothetical protein, at 5,008,310 to 5,008,888 _RS23995 Position (kb) 5006 5007 5008Strain fitness (log2 ratio) -3 -2 -1 0 1at 5006.473 kb on - strandat 5006.518 kb on - strandat 5006.654 kb on + strand, within BWI76_RS23985at 5006.738 kb on + strand, within BWI76_RS23985at 5006.829 kb on - strand, within BWI76_RS23985at 5006.963 kb on - strand, within BWI76_RS23985at 5006.968 kb on - strand, within BWI76_RS23985at 5007.007 kb on - strand, within BWI76_RS23985at 5007.222 kb on + strand, within BWI76_RS23985at 5007.241 kb on + strand, within BWI76_RS23985at 5007.371 kb on + strand, within BWI76_RS23985at 5007.458 kb on - strandat 5007.490 kb on + strandat 5007.490 kb on + strandat 5007.524 kb on + strandat 5007.532 kb on - strandat 5007.532 kb on - strandat 5007.539 kb on + strandat 5007.547 kb on - strandat 5007.625 kb on - strandat 5007.875 kb on + strandat 5007.897 kb on + strandat 5007.902 kb on - strandat 5007.958 kb on + strand, within BWI76_RS23990at 5008.024 kb on - strand, within BWI76_RS23990at 5008.155 kb on - strand, within BWI76_RS23990at 5008.170 kb on + strand, within BWI76_RS23990at 5008.178 kb on - strand, within BWI76_RS23990at 5008.188 kb on + strand, within BWI76_RS23990at 5008.196 kb on - strand, within BWI76_RS23990

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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5,006,473 - +0.2
5,006,518 - -0.3
5,006,654 + BWI76_RS23985 0.19 -1.6
5,006,738 + BWI76_RS23985 0.27 -0.4
5,006,829 - BWI76_RS23985 0.36 -0.8
5,006,963 - BWI76_RS23985 0.49 -2.3
5,006,968 - BWI76_RS23985 0.50 -0.9
5,007,007 - BWI76_RS23985 0.53 +0.2
5,007,222 + BWI76_RS23985 0.74 +0.1
5,007,241 + BWI76_RS23985 0.76 -0.2
5,007,371 + BWI76_RS23985 0.89 -2.2
5,007,458 - -0.6
5,007,490 + -2.5
5,007,490 + -1.1
5,007,524 + -0.8
5,007,532 - +0.3
5,007,532 - +0.8
5,007,539 + -1.6
5,007,547 - -0.8
5,007,625 - +0.5
5,007,875 + -1.6
5,007,897 + -2.9
5,007,902 - -0.9
5,007,958 + BWI76_RS23990 0.23 +0.1
5,008,024 - BWI76_RS23990 0.38 -0.7
5,008,155 - BWI76_RS23990 0.69 -1.0
5,008,170 + BWI76_RS23990 0.73 +0.0
5,008,178 - BWI76_RS23990 0.75 +0.2
5,008,188 + BWI76_RS23990 0.77 +0.3
5,008,196 - BWI76_RS23990 0.79 -0.1

Or see this region's nucleotide sequence