Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17515

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17510 and BWI76_RS17515 are separated by 50 nucleotidesBWI76_RS17515 and BWI76_RS17520 are separated by 12 nucleotidesBWI76_RS17520 and BWI76_RS17525 are separated by 48 nucleotides BWI76_RS17510: BWI76_RS17510 - selenium metabolism hydrolase, at 3,631,161 to 3,632,372 _RS17510 BWI76_RS17515: BWI76_RS17515 - dihydropyrimidinase, at 3,632,423 to 3,633,829 _RS17515 BWI76_RS17520: BWI76_RS17520 - carbamate kinase, at 3,633,842 to 3,634,774 _RS17520 BWI76_RS17525: BWI76_RS17525 - XshC-Cox1-family protein, at 3,634,823 to 3,635,656 _RS17525 Position (kb) 3632 3633 3634Strain fitness (log2 ratio) -2 -1 0 1 2at 3631.498 kb on + strand, within BWI76_RS17510at 3631.631 kb on + strand, within BWI76_RS17510at 3632.060 kb on + strand, within BWI76_RS17510at 3632.070 kb on + strand, within BWI76_RS17510at 3632.070 kb on + strand, within BWI76_RS17510at 3632.078 kb on - strand, within BWI76_RS17510at 3632.182 kb on + strandat 3632.354 kb on - strandat 3632.799 kb on + strand, within BWI76_RS17515at 3632.876 kb on - strand, within BWI76_RS17515at 3633.047 kb on - strand, within BWI76_RS17515at 3633.173 kb on - strandat 3633.284 kb on + strand, within BWI76_RS17515at 3633.354 kb on + strand, within BWI76_RS17515at 3633.904 kb on + strandat 3633.904 kb on + strandat 3634.180 kb on - strand, within BWI76_RS17520at 3634.396 kb on - strand, within BWI76_RS17520at 3634.433 kb on + strand, within BWI76_RS17520at 3634.472 kb on + strand, within BWI76_RS17520at 3634.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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3,631,498 + BWI76_RS17510 0.28 -2.6
3,631,631 + BWI76_RS17510 0.39 +2.2
3,632,060 + BWI76_RS17510 0.74 +0.1
3,632,070 + BWI76_RS17510 0.75 -1.0
3,632,070 + BWI76_RS17510 0.75 +0.5
3,632,078 - BWI76_RS17510 0.76 -2.0
3,632,182 + -1.2
3,632,354 - -0.1
3,632,799 + BWI76_RS17515 0.27 -1.1
3,632,876 - BWI76_RS17515 0.32 +0.3
3,633,047 - BWI76_RS17515 0.44 +0.5
3,633,173 - +2.5
3,633,284 + BWI76_RS17515 0.61 -1.8
3,633,354 + BWI76_RS17515 0.66 -0.8
3,633,904 + +0.1
3,633,904 + +1.4
3,634,180 - BWI76_RS17520 0.36 -0.4
3,634,396 - BWI76_RS17520 0.59 -1.2
3,634,433 + BWI76_RS17520 0.63 +0.5
3,634,472 + BWI76_RS17520 0.68 +0.2
3,634,782 - +0.8

Or see this region's nucleotide sequence