Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13635

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13625 and BWI76_RS13630 are separated by 214 nucleotidesBWI76_RS13630 and BWI76_RS13635 overlap by 4 nucleotidesBWI76_RS13635 and BWI76_RS13640 are separated by 278 nucleotides BWI76_RS13625: BWI76_RS13625 - hypothetical protein, at 2,840,009 to 2,840,590 _RS13625 BWI76_RS13630: BWI76_RS13630 - ABC transporter, at 2,840,805 to 2,841,506 _RS13630 BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471 _RS13635 BWI76_RS13640: BWI76_RS13640 - binding-protein-dependent transport system inner membrane protein, at 2,842,750 to 2,844,405 _RS13640 Position (kb) 2841 2842 2843Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2840.546 kb on - strandat 2840.672 kb on + strandat 2840.701 kb on - strandat 2840.769 kb on + strandat 2840.905 kb on - strand, within BWI76_RS13630at 2841.158 kb on + strand, within BWI76_RS13630at 2841.166 kb on - strand, within BWI76_RS13630at 2841.243 kb on - strand, within BWI76_RS13630at 2841.320 kb on - strandat 2841.396 kb on + strand, within BWI76_RS13630at 2841.466 kb on - strandat 2841.823 kb on + strand, within BWI76_RS13635at 2842.030 kb on - strand, within BWI76_RS13635at 2842.254 kb on - strand, within BWI76_RS13635at 2842.957 kb on + strand, within BWI76_RS13640

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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2,840,546 - +0.1
2,840,672 + -1.8
2,840,701 - -0.7
2,840,769 + -1.6
2,840,905 - BWI76_RS13630 0.14 +1.1
2,841,158 + BWI76_RS13630 0.50 -2.8
2,841,166 - BWI76_RS13630 0.51 +0.5
2,841,243 - BWI76_RS13630 0.62 +1.4
2,841,320 - +2.1
2,841,396 + BWI76_RS13630 0.84 -0.8
2,841,466 - -0.2
2,841,823 + BWI76_RS13635 0.33 -0.2
2,842,030 - BWI76_RS13635 0.54 -1.4
2,842,254 - BWI76_RS13635 0.78 -1.4
2,842,957 + BWI76_RS13640 0.12 -2.7

Or see this region's nucleotide sequence