Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11345

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11330 and BWI76_RS11335 are separated by 156 nucleotidesBWI76_RS11335 and BWI76_RS11340 are separated by 5 nucleotidesBWI76_RS11340 and BWI76_RS11345 are separated by 100 nucleotidesBWI76_RS11345 and BWI76_RS11350 are separated by 71 nucleotides BWI76_RS11330: BWI76_RS11330 - isocitrate dehydrogenase (NADP(+)), at 2,387,817 to 2,389,067 _RS11330 BWI76_RS11335: BWI76_RS11335 - tautomerase, at 2,389,224 to 2,389,610 _RS11335 BWI76_RS11340: BWI76_RS11340 - carboxymuconolactone decarboxylase, at 2,389,616 to 2,389,918 _RS11340 BWI76_RS11345: BWI76_RS11345 - LysR family transcriptional regulator, at 2,390,019 to 2,390,903 _RS11345 BWI76_RS11350: BWI76_RS11350 - DeoR family transcriptional regulator, at 2,390,975 to 2,392,759 _RS11350 Position (kb) 2390 2391Strain fitness (log2 ratio) -2 -1 0 1 2at 2389.183 kb on - strandat 2389.230 kb on - strandat 2389.232 kb on + strandat 2389.346 kb on + strand, within BWI76_RS11335at 2389.581 kb on - strandat 2389.613 kb on + strandat 2389.748 kb on - strandat 2390.229 kb on + strand, within BWI76_RS11345at 2390.595 kb on + strand, within BWI76_RS11345at 2390.605 kb on + strand, within BWI76_RS11345at 2390.859 kb on + strandat 2391.025 kb on - strandat 2391.135 kb on + strandat 2391.175 kb on - strand, within BWI76_RS11350at 2391.383 kb on - strand, within BWI76_RS11350at 2391.388 kb on - strand, within BWI76_RS11350at 2391.547 kb on + strand, within BWI76_RS11350at 2391.620 kb on - strand, within BWI76_RS11350at 2391.740 kb on - strand, within BWI76_RS11350

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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2,389,183 - +0.4
2,389,230 - -0.1
2,389,232 + -1.6
2,389,346 + BWI76_RS11335 0.32 +0.6
2,389,581 - +0.9
2,389,613 + +0.2
2,389,748 - +1.0
2,390,229 + BWI76_RS11345 0.24 -1.6
2,390,595 + BWI76_RS11345 0.65 -0.5
2,390,605 + BWI76_RS11345 0.66 -1.9
2,390,859 + +2.0
2,391,025 - +0.1
2,391,135 + -0.1
2,391,175 - BWI76_RS11350 0.11 -1.2
2,391,383 - BWI76_RS11350 0.23 +0.1
2,391,388 - BWI76_RS11350 0.23 -1.3
2,391,547 + BWI76_RS11350 0.32 +0.0
2,391,620 - BWI76_RS11350 0.36 +0.5
2,391,740 - BWI76_RS11350 0.43 -1.7

Or see this region's nucleotide sequence