Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10700

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10695 and BWI76_RS10700 are separated by 245 nucleotidesBWI76_RS10700 and BWI76_RS10705 are separated by 25 nucleotides BWI76_RS10695: BWI76_RS10695 - aldehyde dehydrogenase PuuC, at 2,260,130 to 2,261,617 _RS10695 BWI76_RS10700: BWI76_RS10700 - XRE family transcriptional regulator, at 2,261,863 to 2,262,420 _RS10700 BWI76_RS10705: BWI76_RS10705 - Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) (from data), at 2,262,446 to 2,263,210 _RS10705 Position (kb) 2261 2262 2263Strain fitness (log2 ratio) -3 -2 -1 0 1at 2261.044 kb on + strand, within BWI76_RS10695at 2261.160 kb on + strand, within BWI76_RS10695at 2261.206 kb on - strand, within BWI76_RS10695at 2261.317 kb on + strand, within BWI76_RS10695at 2261.374 kb on + strand, within BWI76_RS10695at 2261.431 kb on - strand, within BWI76_RS10695at 2261.470 kb on + strandat 2261.516 kb on + strandat 2261.696 kb on + strandat 2262.144 kb on - strand, within BWI76_RS10700at 2262.196 kb on - strand, within BWI76_RS10700at 2262.321 kb on + strand, within BWI76_RS10700at 2262.329 kb on - strand, within BWI76_RS10700at 2262.473 kb on + strandat 2262.543 kb on + strand, within BWI76_RS10705at 2262.563 kb on + strand, within BWI76_RS10705at 2262.639 kb on - strand, within BWI76_RS10705at 2262.796 kb on - strand, within BWI76_RS10705at 2262.916 kb on + strand, within BWI76_RS10705at 2262.928 kb on + strand, within BWI76_RS10705at 2263.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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2,261,044 + BWI76_RS10695 0.61 -3.4
2,261,160 + BWI76_RS10695 0.69 -1.6
2,261,206 - BWI76_RS10695 0.72 +0.5
2,261,317 + BWI76_RS10695 0.80 +0.6
2,261,374 + BWI76_RS10695 0.84 -0.7
2,261,431 - BWI76_RS10695 0.87 +0.6
2,261,470 + +0.4
2,261,516 + +0.6
2,261,696 + +0.0
2,262,144 - BWI76_RS10700 0.50 -2.2
2,262,196 - BWI76_RS10700 0.60 -1.9
2,262,321 + BWI76_RS10700 0.82 -1.3
2,262,329 - BWI76_RS10700 0.84 -2.0
2,262,473 + -0.5
2,262,543 + BWI76_RS10705 0.13 -1.2
2,262,563 + BWI76_RS10705 0.15 -0.9
2,262,639 - BWI76_RS10705 0.25 -1.7
2,262,796 - BWI76_RS10705 0.46 +0.3
2,262,916 + BWI76_RS10705 0.61 -0.1
2,262,928 + BWI76_RS10705 0.63 -0.4
2,263,134 + -0.4

Or see this region's nucleotide sequence