Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07680

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07675 and BWI76_RS07680 are separated by 364 nucleotidesBWI76_RS07680 and BWI76_RS07685 overlap by 8 nucleotidesBWI76_RS07685 and BWI76_RS07690 are separated by 53 nucleotides BWI76_RS07675: BWI76_RS07675 - DeoR family transcriptional regulator, at 1,626,024 to 1,626,974 _RS07675 BWI76_RS07680: BWI76_RS07680 - transketolase, at 1,627,339 to 1,628,169 _RS07680 BWI76_RS07685: BWI76_RS07685 - transketolase, at 1,628,162 to 1,629,097 _RS07685 BWI76_RS07690: BWI76_RS07690 - enterochelin synthetase component D, at 1,629,151 to 1,629,774 _RS07690 Position (kb) 1627 1628 1629Strain fitness (log2 ratio) -2 -1 0 1 2at 1626.433 kb on - strand, within BWI76_RS07675at 1626.445 kb on - strand, within BWI76_RS07675at 1626.746 kb on + strand, within BWI76_RS07675at 1626.824 kb on - strand, within BWI76_RS07675at 1626.905 kb on + strandat 1626.927 kb on - strandat 1627.011 kb on - strandat 1627.181 kb on - strandat 1627.204 kb on + strandat 1627.251 kb on - strandat 1627.388 kb on - strandat 1627.482 kb on + strand, within BWI76_RS07680at 1627.564 kb on - strand, within BWI76_RS07680at 1627.817 kb on - strand, within BWI76_RS07680at 1628.179 kb on + strandat 1628.630 kb on - strand, within BWI76_RS07685at 1629.163 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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1,626,433 - BWI76_RS07675 0.43 +0.1
1,626,445 - BWI76_RS07675 0.44 +0.6
1,626,746 + BWI76_RS07675 0.76 +0.1
1,626,824 - BWI76_RS07675 0.84 +0.4
1,626,905 + +2.0
1,626,927 - -0.5
1,627,011 - -1.7
1,627,181 - -0.2
1,627,204 + -0.4
1,627,251 - +0.1
1,627,388 - -0.8
1,627,482 + BWI76_RS07680 0.17 -0.7
1,627,564 - BWI76_RS07680 0.27 -0.8
1,627,817 - BWI76_RS07680 0.58 -1.4
1,628,179 + +0.3
1,628,630 - BWI76_RS07685 0.50 -1.0
1,629,163 + -2.7

Or see this region's nucleotide sequence