Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07160

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07155 and BWI76_RS07160 are separated by 173 nucleotidesBWI76_RS07160 and BWI76_RS07165 are separated by 9 nucleotidesBWI76_RS07165 and BWI76_RS07170 are separated by 138 nucleotides BWI76_RS07155: BWI76_RS07155 - fibronectin type III domain-containing protein, at 1,502,511 to 1,504,487 _RS07155 BWI76_RS07160: BWI76_RS07160 - MBL fold hydrolase, at 1,504,661 to 1,505,488 _RS07160 BWI76_RS07165: BWI76_RS07165 - hypothetical protein, at 1,505,498 to 1,506,040 _RS07165 BWI76_RS07170: BWI76_RS07170 - LysR family transcriptional regulator, at 1,506,179 to 1,507,054 _RS07170 Position (kb) 1504 1505 1506Strain fitness (log2 ratio) -2 -1 0 1at 1503.777 kb on - strand, within BWI76_RS07155at 1503.896 kb on + strand, within BWI76_RS07155at 1503.902 kb on - strand, within BWI76_RS07155at 1503.902 kb on - strand, within BWI76_RS07155at 1503.964 kb on - strand, within BWI76_RS07155at 1504.062 kb on + strand, within BWI76_RS07155at 1504.079 kb on + strand, within BWI76_RS07155at 1504.079 kb on + strand, within BWI76_RS07155at 1504.087 kb on - strand, within BWI76_RS07155at 1504.087 kb on - strand, within BWI76_RS07155at 1504.385 kb on + strandat 1504.409 kb on + strandat 1504.449 kb on + strandat 1504.463 kb on + strandat 1504.587 kb on + strandat 1504.587 kb on + strandat 1504.633 kb on + strandat 1504.660 kb on - strandat 1504.675 kb on + strandat 1504.700 kb on + strandat 1504.712 kb on + strandat 1504.720 kb on - strandat 1504.799 kb on + strand, within BWI76_RS07160at 1504.802 kb on - strand, within BWI76_RS07160at 1504.802 kb on - strand, within BWI76_RS07160at 1504.941 kb on - strand, within BWI76_RS07160at 1505.289 kb on + strand, within BWI76_RS07160at 1505.831 kb on - strand, within BWI76_RS07165at 1505.861 kb on + strand, within BWI76_RS07165at 1506.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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1,503,777 - BWI76_RS07155 0.64 +0.1
1,503,896 + BWI76_RS07155 0.70 +0.1
1,503,902 - BWI76_RS07155 0.70 +0.4
1,503,902 - BWI76_RS07155 0.70 -0.6
1,503,964 - BWI76_RS07155 0.73 -0.6
1,504,062 + BWI76_RS07155 0.78 -2.4
1,504,079 + BWI76_RS07155 0.79 +0.3
1,504,079 + BWI76_RS07155 0.79 -0.2
1,504,087 - BWI76_RS07155 0.80 +0.2
1,504,087 - BWI76_RS07155 0.80 +1.1
1,504,385 + -2.6
1,504,409 + -0.1
1,504,449 + -1.1
1,504,463 + -0.2
1,504,587 + -1.0
1,504,587 + -2.1
1,504,633 + -0.8
1,504,660 - -1.3
1,504,675 + -2.2
1,504,700 + -0.0
1,504,712 + +0.1
1,504,720 - +0.2
1,504,799 + BWI76_RS07160 0.17 -2.0
1,504,802 - BWI76_RS07160 0.17 -0.4
1,504,802 - BWI76_RS07160 0.17 -0.1
1,504,941 - BWI76_RS07160 0.34 -1.9
1,505,289 + BWI76_RS07160 0.76 -0.6
1,505,831 - BWI76_RS07165 0.61 +0.1
1,505,861 + BWI76_RS07165 0.67 -1.4
1,506,224 - -0.8

Or see this region's nucleotide sequence