Experiment: K. M5a1 KLEB22 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13340 and BWI76_RS13345 are separated by 138 nucleotides BWI76_RS13345 and BWI76_RS13350 are separated by 88 nucleotides BWI76_RS13350 and BWI76_RS13355 are separated by 183 nucleotides
BWI76_RS13340: BWI76_RS13340 - peptide ABC transporter substrate-binding protein, at 2,781,998 to 2,783,590
_RS13340
BWI76_RS13345: BWI76_RS13345 - DUF3313 domain-containing protein, at 2,783,729 to 2,784,397
_RS13345
BWI76_RS13350: BWI76_RS13350 - EamA family transporter, at 2,784,486 to 2,785,394
_RS13350
BWI76_RS13355: BWI76_RS13355 - AraC family transcriptional regulator, at 2,785,578 to 2,786,444
_RS13355
Position (kb)
2784
2785
2786 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2783.527 kb on + strand at 2783.527 kb on + strand at 2783.528 kb on - strand at 2783.675 kb on - strand at 2783.686 kb on + strand at 2783.717 kb on + strand at 2783.723 kb on + strand at 2783.725 kb on - strand at 2783.877 kb on + strand, within BWI76_RS13345 at 2783.877 kb on + strand, within BWI76_RS13345 at 2783.877 kb on + strand, within BWI76_RS13345 at 2783.885 kb on - strand, within BWI76_RS13345 at 2783.887 kb on + strand, within BWI76_RS13345 at 2783.949 kb on + strand, within BWI76_RS13345 at 2783.949 kb on + strand, within BWI76_RS13345 at 2783.957 kb on - strand, within BWI76_RS13345 at 2783.973 kb on + strand, within BWI76_RS13345 at 2783.974 kb on - strand, within BWI76_RS13345 at 2784.018 kb on + strand, within BWI76_RS13345 at 2784.082 kb on - strand, within BWI76_RS13345 at 2784.298 kb on - strand, within BWI76_RS13345 at 2784.569 kb on + strand at 2784.655 kb on + strand, within BWI76_RS13350 at 2784.696 kb on + strand, within BWI76_RS13350 at 2784.744 kb on + strand, within BWI76_RS13350 at 2784.904 kb on - strand, within BWI76_RS13350 at 2784.978 kb on + strand, within BWI76_RS13350 at 2785.265 kb on + strand, within BWI76_RS13350 at 2785.383 kb on - strand at 2785.441 kb on - strand at 2785.441 kb on - strand at 2785.533 kb on - strand at 2785.544 kb on + strand at 2785.828 kb on + strand, within BWI76_RS13355 at 2785.912 kb on - strand, within BWI76_RS13355 at 2786.127 kb on - strand, within BWI76_RS13355 at 2786.288 kb on - strand, within BWI76_RS13355
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10 remove 2,783,527 + -0.5 2,783,527 + -1.9 2,783,528 - -0.4 2,783,675 - +0.3 2,783,686 + +0.5 2,783,717 + +1.3 2,783,723 + +0.6 2,783,725 - -0.5 2,783,877 + BWI76_RS13345 0.22 -1.6 2,783,877 + BWI76_RS13345 0.22 -0.7 2,783,877 + BWI76_RS13345 0.22 +1.3 2,783,885 - BWI76_RS13345 0.23 -0.0 2,783,887 + BWI76_RS13345 0.24 -0.6 2,783,949 + BWI76_RS13345 0.33 -1.3 2,783,949 + BWI76_RS13345 0.33 -0.2 2,783,957 - BWI76_RS13345 0.34 -0.7 2,783,973 + BWI76_RS13345 0.36 +0.1 2,783,974 - BWI76_RS13345 0.37 +1.2 2,784,018 + BWI76_RS13345 0.43 -1.5 2,784,082 - BWI76_RS13345 0.53 -0.3 2,784,298 - BWI76_RS13345 0.85 +0.3 2,784,569 + -1.9 2,784,655 + BWI76_RS13350 0.19 +0.2 2,784,696 + BWI76_RS13350 0.23 -0.8 2,784,744 + BWI76_RS13350 0.28 -1.9 2,784,904 - BWI76_RS13350 0.46 -3.0 2,784,978 + BWI76_RS13350 0.54 -0.5 2,785,265 + BWI76_RS13350 0.86 -2.4 2,785,383 - +0.5 2,785,441 - +0.4 2,785,441 - +0.7 2,785,533 - -1.7 2,785,544 + +0.6 2,785,828 + BWI76_RS13355 0.29 -2.6 2,785,912 - BWI76_RS13355 0.39 +0.1 2,786,127 - BWI76_RS13355 0.63 -0.1 2,786,288 - BWI76_RS13355 0.82 -0.4
Or see this region's nucleotide sequence