Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13350

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13340 and BWI76_RS13345 are separated by 138 nucleotidesBWI76_RS13345 and BWI76_RS13350 are separated by 88 nucleotidesBWI76_RS13350 and BWI76_RS13355 are separated by 183 nucleotides BWI76_RS13340: BWI76_RS13340 - peptide ABC transporter substrate-binding protein, at 2,781,998 to 2,783,590 _RS13340 BWI76_RS13345: BWI76_RS13345 - DUF3313 domain-containing protein, at 2,783,729 to 2,784,397 _RS13345 BWI76_RS13350: BWI76_RS13350 - EamA family transporter, at 2,784,486 to 2,785,394 _RS13350 BWI76_RS13355: BWI76_RS13355 - AraC family transcriptional regulator, at 2,785,578 to 2,786,444 _RS13355 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -3 -2 -1 0 1at 2783.527 kb on + strandat 2783.527 kb on + strandat 2783.528 kb on - strandat 2783.675 kb on - strandat 2783.686 kb on + strandat 2783.717 kb on + strandat 2783.723 kb on + strandat 2783.725 kb on - strandat 2783.877 kb on + strand, within BWI76_RS13345at 2783.877 kb on + strand, within BWI76_RS13345at 2783.877 kb on + strand, within BWI76_RS13345at 2783.885 kb on - strand, within BWI76_RS13345at 2783.887 kb on + strand, within BWI76_RS13345at 2783.949 kb on + strand, within BWI76_RS13345at 2783.949 kb on + strand, within BWI76_RS13345at 2783.957 kb on - strand, within BWI76_RS13345at 2783.973 kb on + strand, within BWI76_RS13345at 2783.974 kb on - strand, within BWI76_RS13345at 2784.018 kb on + strand, within BWI76_RS13345at 2784.082 kb on - strand, within BWI76_RS13345at 2784.298 kb on - strand, within BWI76_RS13345at 2784.569 kb on + strandat 2784.655 kb on + strand, within BWI76_RS13350at 2784.696 kb on + strand, within BWI76_RS13350at 2784.744 kb on + strand, within BWI76_RS13350at 2784.904 kb on - strand, within BWI76_RS13350at 2784.978 kb on + strand, within BWI76_RS13350at 2785.265 kb on + strand, within BWI76_RS13350at 2785.383 kb on - strandat 2785.441 kb on - strandat 2785.441 kb on - strandat 2785.533 kb on - strandat 2785.544 kb on + strandat 2785.828 kb on + strand, within BWI76_RS13355at 2785.912 kb on - strand, within BWI76_RS13355at 2786.127 kb on - strand, within BWI76_RS13355at 2786.288 kb on - strand, within BWI76_RS13355

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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2,783,527 + -0.5
2,783,527 + -1.9
2,783,528 - -0.4
2,783,675 - +0.3
2,783,686 + +0.5
2,783,717 + +1.3
2,783,723 + +0.6
2,783,725 - -0.5
2,783,877 + BWI76_RS13345 0.22 -1.6
2,783,877 + BWI76_RS13345 0.22 -0.7
2,783,877 + BWI76_RS13345 0.22 +1.3
2,783,885 - BWI76_RS13345 0.23 -0.0
2,783,887 + BWI76_RS13345 0.24 -0.6
2,783,949 + BWI76_RS13345 0.33 -1.3
2,783,949 + BWI76_RS13345 0.33 -0.2
2,783,957 - BWI76_RS13345 0.34 -0.7
2,783,973 + BWI76_RS13345 0.36 +0.1
2,783,974 - BWI76_RS13345 0.37 +1.2
2,784,018 + BWI76_RS13345 0.43 -1.5
2,784,082 - BWI76_RS13345 0.53 -0.3
2,784,298 - BWI76_RS13345 0.85 +0.3
2,784,569 + -1.9
2,784,655 + BWI76_RS13350 0.19 +0.2
2,784,696 + BWI76_RS13350 0.23 -0.8
2,784,744 + BWI76_RS13350 0.28 -1.9
2,784,904 - BWI76_RS13350 0.46 -3.0
2,784,978 + BWI76_RS13350 0.54 -0.5
2,785,265 + BWI76_RS13350 0.86 -2.4
2,785,383 - +0.5
2,785,441 - +0.4
2,785,441 - +0.7
2,785,533 - -1.7
2,785,544 + +0.6
2,785,828 + BWI76_RS13355 0.29 -2.6
2,785,912 - BWI76_RS13355 0.39 +0.1
2,786,127 - BWI76_RS13355 0.63 -0.1
2,786,288 - BWI76_RS13355 0.82 -0.4

Or see this region's nucleotide sequence