Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12440

Experiment: K. M5a1 KLEB22 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12435 and BWI76_RS12440 are separated by 25 nucleotidesBWI76_RS12440 and BWI76_RS12445 overlap by 10 nucleotides BWI76_RS12435: BWI76_RS12435 - putative amino acid amidohydrolase, at 2,598,942 to 2,600,111 _RS12435 BWI76_RS12440: BWI76_RS12440 - MFS transporter, at 2,600,137 to 2,601,528 _RS12440 BWI76_RS12445: BWI76_RS12445 - phage shock protein operon transcriptional activator, at 2,601,519 to 2,602,493 _RS12445 Position (kb) 2600 2601 2602Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2599.137 kb on - strand, within BWI76_RS12435at 2599.211 kb on + strand, within BWI76_RS12435at 2599.219 kb on - strand, within BWI76_RS12435at 2599.285 kb on - strand, within BWI76_RS12435at 2599.366 kb on - strand, within BWI76_RS12435at 2599.366 kb on - strand, within BWI76_RS12435at 2599.366 kb on - strand, within BWI76_RS12435at 2599.381 kb on - strand, within BWI76_RS12435at 2599.657 kb on + strand, within BWI76_RS12435at 2599.664 kb on + strand, within BWI76_RS12435at 2599.809 kb on + strand, within BWI76_RS12435at 2599.809 kb on + strand, within BWI76_RS12435at 2599.817 kb on - strand, within BWI76_RS12435at 2599.897 kb on + strand, within BWI76_RS12435at 2600.149 kb on - strandat 2600.452 kb on - strand, within BWI76_RS12440at 2600.454 kb on + strand, within BWI76_RS12440at 2600.462 kb on - strand, within BWI76_RS12440at 2600.564 kb on + strand, within BWI76_RS12440at 2600.739 kb on - strand, within BWI76_RS12440at 2600.821 kb on + strand, within BWI76_RS12440at 2600.980 kb on - strand, within BWI76_RS12440at 2601.066 kb on - strand, within BWI76_RS12440at 2601.192 kb on + strand, within BWI76_RS12440at 2601.304 kb on - strand, within BWI76_RS12440at 2601.352 kb on - strand, within BWI76_RS12440at 2601.411 kb on + strandat 2601.442 kb on - strandat 2601.473 kb on + strandat 2601.655 kb on - strand, within BWI76_RS12445at 2601.837 kb on + strand, within BWI76_RS12445at 2601.993 kb on + strand, within BWI76_RS12445at 2602.265 kb on + strand, within BWI76_RS12445at 2602.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 10
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2,599,137 - BWI76_RS12435 0.17 -3.4
2,599,211 + BWI76_RS12435 0.23 -1.9
2,599,219 - BWI76_RS12435 0.24 +1.3
2,599,285 - BWI76_RS12435 0.29 +1.6
2,599,366 - BWI76_RS12435 0.36 +1.7
2,599,366 - BWI76_RS12435 0.36 +1.3
2,599,366 - BWI76_RS12435 0.36 +3.6
2,599,381 - BWI76_RS12435 0.38 +0.5
2,599,657 + BWI76_RS12435 0.61 +0.6
2,599,664 + BWI76_RS12435 0.62 -0.1
2,599,809 + BWI76_RS12435 0.74 -0.2
2,599,809 + BWI76_RS12435 0.74 -0.0
2,599,817 - BWI76_RS12435 0.75 +0.2
2,599,897 + BWI76_RS12435 0.82 +0.2
2,600,149 - -0.1
2,600,452 - BWI76_RS12440 0.23 -3.4
2,600,454 + BWI76_RS12440 0.23 -0.6
2,600,462 - BWI76_RS12440 0.23 -2.2
2,600,564 + BWI76_RS12440 0.31 -0.4
2,600,739 - BWI76_RS12440 0.43 -1.9
2,600,821 + BWI76_RS12440 0.49 -1.9
2,600,980 - BWI76_RS12440 0.61 +0.2
2,601,066 - BWI76_RS12440 0.67 -0.2
2,601,192 + BWI76_RS12440 0.76 -1.1
2,601,304 - BWI76_RS12440 0.84 +0.7
2,601,352 - BWI76_RS12440 0.87 -1.2
2,601,411 + +0.4
2,601,442 - +0.1
2,601,473 + -0.5
2,601,655 - BWI76_RS12445 0.14 -0.1
2,601,837 + BWI76_RS12445 0.33 -2.7
2,601,993 + BWI76_RS12445 0.49 -0.2
2,602,265 + BWI76_RS12445 0.77 +0.1
2,602,423 + -0.9

Or see this region's nucleotide sequence