Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24220

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24215 and BWI76_RS24220 are separated by 98 nucleotidesBWI76_RS24220 and BWI76_RS24225 are separated by 104 nucleotidesBWI76_RS24225 and BWI76_RS24230 are separated by 181 nucleotides BWI76_RS24215: BWI76_RS24215 - LysR family transcriptional regulator, at 5,048,101 to 5,049,000 _RS24215 BWI76_RS24220: BWI76_RS24220 - short chain dehydrogenase, at 5,049,099 to 5,049,701 _RS24220 BWI76_RS24225: BWI76_RS24225 - hypothetical protein, at 5,049,806 to 5,050,144 _RS24225 BWI76_RS24230: BWI76_RS24230 - hypothetical protein, at 5,050,326 to 5,050,514 _RS24230 Position (kb) 5049 5050Strain fitness (log2 ratio) -1 0 1at 5048.219 kb on + strand, within BWI76_RS24215at 5048.249 kb on - strand, within BWI76_RS24215at 5048.352 kb on - strand, within BWI76_RS24215at 5048.645 kb on + strand, within BWI76_RS24215at 5048.751 kb on + strand, within BWI76_RS24215at 5048.872 kb on - strand, within BWI76_RS24215at 5049.017 kb on - strandat 5049.040 kb on + strandat 5049.154 kb on + strandat 5049.378 kb on + strand, within BWI76_RS24220at 5049.477 kb on + strand, within BWI76_RS24220at 5049.549 kb on - strand, within BWI76_RS24220at 5049.636 kb on + strand, within BWI76_RS24220at 5049.636 kb on + strand, within BWI76_RS24220at 5049.639 kb on - strand, within BWI76_RS24220at 5049.644 kb on - strandat 5049.655 kb on + strandat 5049.853 kb on - strand, within BWI76_RS24225at 5050.011 kb on - strand, within BWI76_RS24225at 5050.105 kb on - strand, within BWI76_RS24225at 5050.107 kb on + strand, within BWI76_RS24225at 5050.242 kb on + strandat 5050.630 kb on + strandat 5050.691 kb on + strandat 5050.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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5,048,219 + BWI76_RS24215 0.13 -0.5
5,048,249 - BWI76_RS24215 0.16 -0.2
5,048,352 - BWI76_RS24215 0.28 -0.5
5,048,645 + BWI76_RS24215 0.60 +0.0
5,048,751 + BWI76_RS24215 0.72 +0.4
5,048,872 - BWI76_RS24215 0.86 -0.7
5,049,017 - +1.4
5,049,040 + +0.7
5,049,154 + -1.6
5,049,378 + BWI76_RS24220 0.46 -1.2
5,049,477 + BWI76_RS24220 0.63 -0.3
5,049,549 - BWI76_RS24220 0.75 -0.9
5,049,636 + BWI76_RS24220 0.89 +0.2
5,049,636 + BWI76_RS24220 0.89 -1.2
5,049,639 - BWI76_RS24220 0.90 -0.4
5,049,644 - -0.4
5,049,655 + +0.2
5,049,853 - BWI76_RS24225 0.14 +0.0
5,050,011 - BWI76_RS24225 0.60 -0.5
5,050,105 - BWI76_RS24225 0.88 +0.6
5,050,107 + BWI76_RS24225 0.89 +0.8
5,050,242 + +1.2
5,050,630 + +0.1
5,050,691 + -0.1
5,050,691 + -0.2

Or see this region's nucleotide sequence