Experiment: K. M5a1 KLEB23 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22395 and BWI76_RS22400 are separated by 174 nucleotides BWI76_RS22400 and BWI76_RS22405 are separated by 9 nucleotides BWI76_RS22405 and BWI76_RS22410 are separated by 23 nucleotides BWI76_RS22410 and BWI76_RS22415 are separated by 207 nucleotides
BWI76_RS22395: BWI76_RS22395 - hypothetical protein, at 4,670,410 to 4,671,681
_RS22395
BWI76_RS22400: BWI76_RS22400 - PTS sugar transporter subunit IIB, at 4,671,856 to 4,672,170
_RS22400
BWI76_RS22405: BWI76_RS22405 - PTS cellobiose transporter subunit IIC, at 4,672,180 to 4,673,502
_RS22405
BWI76_RS22410: BWI76_RS22410 - PTS lactose/cellobiose transporter subunit IIA, at 4,673,526 to 4,673,840
_RS22410
BWI76_RS22415: BWI76_RS22415 - transcriptional regulator, at 4,674,048 to 4,674,962
_RS22415
Position (kb)
4672
4673
4674 Strain fitness (log2 ratio)
-1
0
1 at 4671.287 kb on - strand, within BWI76_RS22395 at 4671.347 kb on + strand, within BWI76_RS22395 at 4671.412 kb on - strand, within BWI76_RS22395 at 4671.755 kb on - strand at 4671.868 kb on + strand at 4672.077 kb on - strand, within BWI76_RS22400 at 4672.184 kb on - strand at 4672.198 kb on + strand at 4672.294 kb on + strand at 4672.308 kb on - strand at 4672.422 kb on - strand, within BWI76_RS22405 at 4672.614 kb on - strand, within BWI76_RS22405 at 4673.031 kb on - strand, within BWI76_RS22405 at 4673.243 kb on + strand, within BWI76_RS22405 at 4673.258 kb on + strand, within BWI76_RS22405 at 4673.374 kb on + strand at 4673.511 kb on + strand at 4673.603 kb on - strand, within BWI76_RS22410 at 4673.605 kb on + strand, within BWI76_RS22410 at 4673.613 kb on - strand, within BWI76_RS22410 at 4673.778 kb on - strand, within BWI76_RS22410 at 4673.851 kb on + strand at 4673.938 kb on + strand at 4674.152 kb on - strand, within BWI76_RS22415 at 4674.162 kb on - strand at 4674.188 kb on + strand, within BWI76_RS22415 at 4674.196 kb on - strand, within BWI76_RS22415 at 4674.242 kb on + strand, within BWI76_RS22415 at 4674.381 kb on - strand, within BWI76_RS22415
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1 remove 4,671,287 - BWI76_RS22395 0.69 +0.0 4,671,347 + BWI76_RS22395 0.74 +0.1 4,671,412 - BWI76_RS22395 0.79 -0.9 4,671,755 - +0.3 4,671,868 + -0.3 4,672,077 - BWI76_RS22400 0.70 -0.3 4,672,184 - +0.3 4,672,198 + -0.2 4,672,294 + -0.6 4,672,308 - -0.6 4,672,422 - BWI76_RS22405 0.18 -0.5 4,672,614 - BWI76_RS22405 0.33 -0.6 4,673,031 - BWI76_RS22405 0.64 -1.2 4,673,243 + BWI76_RS22405 0.80 -0.7 4,673,258 + BWI76_RS22405 0.81 +0.1 4,673,374 + -0.5 4,673,511 + -0.4 4,673,603 - BWI76_RS22410 0.24 -0.6 4,673,605 + BWI76_RS22410 0.25 +0.1 4,673,613 - BWI76_RS22410 0.28 +0.1 4,673,778 - BWI76_RS22410 0.80 +0.6 4,673,851 + -0.3 4,673,938 + -0.2 4,674,152 - BWI76_RS22415 0.11 +0.2 4,674,162 - -0.9 4,674,188 + BWI76_RS22415 0.15 +1.2 4,674,196 - BWI76_RS22415 0.16 -0.3 4,674,242 + BWI76_RS22415 0.21 -0.3 4,674,381 - BWI76_RS22415 0.36 +0.9
Or see this region's nucleotide sequence