Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22405

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22395 and BWI76_RS22400 are separated by 174 nucleotidesBWI76_RS22400 and BWI76_RS22405 are separated by 9 nucleotidesBWI76_RS22405 and BWI76_RS22410 are separated by 23 nucleotidesBWI76_RS22410 and BWI76_RS22415 are separated by 207 nucleotides BWI76_RS22395: BWI76_RS22395 - hypothetical protein, at 4,670,410 to 4,671,681 _RS22395 BWI76_RS22400: BWI76_RS22400 - PTS sugar transporter subunit IIB, at 4,671,856 to 4,672,170 _RS22400 BWI76_RS22405: BWI76_RS22405 - PTS cellobiose transporter subunit IIC, at 4,672,180 to 4,673,502 _RS22405 BWI76_RS22410: BWI76_RS22410 - PTS lactose/cellobiose transporter subunit IIA, at 4,673,526 to 4,673,840 _RS22410 BWI76_RS22415: BWI76_RS22415 - transcriptional regulator, at 4,674,048 to 4,674,962 _RS22415 Position (kb) 4672 4673 4674Strain fitness (log2 ratio) -1 0 1at 4671.287 kb on - strand, within BWI76_RS22395at 4671.347 kb on + strand, within BWI76_RS22395at 4671.412 kb on - strand, within BWI76_RS22395at 4671.755 kb on - strandat 4671.868 kb on + strandat 4672.077 kb on - strand, within BWI76_RS22400at 4672.184 kb on - strandat 4672.198 kb on + strandat 4672.294 kb on + strandat 4672.308 kb on - strandat 4672.422 kb on - strand, within BWI76_RS22405at 4672.614 kb on - strand, within BWI76_RS22405at 4673.031 kb on - strand, within BWI76_RS22405at 4673.243 kb on + strand, within BWI76_RS22405at 4673.258 kb on + strand, within BWI76_RS22405at 4673.374 kb on + strandat 4673.511 kb on + strandat 4673.603 kb on - strand, within BWI76_RS22410at 4673.605 kb on + strand, within BWI76_RS22410at 4673.613 kb on - strand, within BWI76_RS22410at 4673.778 kb on - strand, within BWI76_RS22410at 4673.851 kb on + strandat 4673.938 kb on + strandat 4674.152 kb on - strand, within BWI76_RS22415at 4674.162 kb on - strandat 4674.188 kb on + strand, within BWI76_RS22415at 4674.196 kb on - strand, within BWI76_RS22415at 4674.242 kb on + strand, within BWI76_RS22415at 4674.381 kb on - strand, within BWI76_RS22415

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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4,671,287 - BWI76_RS22395 0.69 +0.0
4,671,347 + BWI76_RS22395 0.74 +0.1
4,671,412 - BWI76_RS22395 0.79 -0.9
4,671,755 - +0.3
4,671,868 + -0.3
4,672,077 - BWI76_RS22400 0.70 -0.3
4,672,184 - +0.3
4,672,198 + -0.2
4,672,294 + -0.6
4,672,308 - -0.6
4,672,422 - BWI76_RS22405 0.18 -0.5
4,672,614 - BWI76_RS22405 0.33 -0.6
4,673,031 - BWI76_RS22405 0.64 -1.2
4,673,243 + BWI76_RS22405 0.80 -0.7
4,673,258 + BWI76_RS22405 0.81 +0.1
4,673,374 + -0.5
4,673,511 + -0.4
4,673,603 - BWI76_RS22410 0.24 -0.6
4,673,605 + BWI76_RS22410 0.25 +0.1
4,673,613 - BWI76_RS22410 0.28 +0.1
4,673,778 - BWI76_RS22410 0.80 +0.6
4,673,851 + -0.3
4,673,938 + -0.2
4,674,152 - BWI76_RS22415 0.11 +0.2
4,674,162 - -0.9
4,674,188 + BWI76_RS22415 0.15 +1.2
4,674,196 - BWI76_RS22415 0.16 -0.3
4,674,242 + BWI76_RS22415 0.21 -0.3
4,674,381 - BWI76_RS22415 0.36 +0.9

Or see this region's nucleotide sequence