Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16765

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16760 and BWI76_RS16765 overlap by 8 nucleotidesBWI76_RS16765 and BWI76_RS16770 are separated by 71 nucleotides BWI76_RS16760: BWI76_RS16760 - lipase, at 3,471,793 to 3,472,863 _RS16760 BWI76_RS16765: BWI76_RS16765 - spermidine/putrescine ABC transporter permease, at 3,472,856 to 3,474,625 _RS16765 BWI76_RS16770: BWI76_RS16770 - extracellular solute-binding protein, at 3,474,697 to 3,475,785 _RS16770 Position (kb) 3472 3473 3474 3475Strain fitness (log2 ratio) -2 -1 0 1at 3471.859 kb on - strandat 3471.966 kb on - strand, within BWI76_RS16760at 3471.970 kb on - strand, within BWI76_RS16760at 3472.087 kb on - strand, within BWI76_RS16760at 3472.494 kb on + strandat 3472.540 kb on - strand, within BWI76_RS16760at 3472.540 kb on - strand, within BWI76_RS16760at 3472.611 kb on + strand, within BWI76_RS16760at 3472.998 kb on + strandat 3473.131 kb on + strand, within BWI76_RS16765at 3473.269 kb on + strand, within BWI76_RS16765at 3473.424 kb on - strand, within BWI76_RS16765at 3473.999 kb on + strand, within BWI76_RS16765at 3474.173 kb on + strand, within BWI76_RS16765at 3474.843 kb on + strand, within BWI76_RS16770at 3474.874 kb on - strand, within BWI76_RS16770at 3474.897 kb on - strand, within BWI76_RS16770at 3474.971 kb on + strand, within BWI76_RS16770at 3474.979 kb on + strand, within BWI76_RS16770at 3475.197 kb on - strand, within BWI76_RS16770at 3475.274 kb on + strand, within BWI76_RS16770at 3475.282 kb on - strand, within BWI76_RS16770at 3475.456 kb on + strand, within BWI76_RS16770at 3475.516 kb on - strand, within BWI76_RS16770

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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3,471,859 - -0.5
3,471,966 - BWI76_RS16760 0.16 +0.1
3,471,970 - BWI76_RS16760 0.17 +0.7
3,472,087 - BWI76_RS16760 0.27 -0.4
3,472,494 + -1.0
3,472,540 - BWI76_RS16760 0.70 -1.5
3,472,540 - BWI76_RS16760 0.70 +1.6
3,472,611 + BWI76_RS16760 0.76 -1.1
3,472,998 + +0.5
3,473,131 + BWI76_RS16765 0.16 -0.6
3,473,269 + BWI76_RS16765 0.23 +0.1
3,473,424 - BWI76_RS16765 0.32 -0.3
3,473,999 + BWI76_RS16765 0.65 -2.1
3,474,173 + BWI76_RS16765 0.74 -0.7
3,474,843 + BWI76_RS16770 0.13 +0.0
3,474,874 - BWI76_RS16770 0.16 +0.6
3,474,897 - BWI76_RS16770 0.18 -0.5
3,474,971 + BWI76_RS16770 0.25 -0.3
3,474,979 + BWI76_RS16770 0.26 -0.1
3,475,197 - BWI76_RS16770 0.46 +0.3
3,475,274 + BWI76_RS16770 0.53 +0.1
3,475,282 - BWI76_RS16770 0.54 +1.4
3,475,456 + BWI76_RS16770 0.70 +0.2
3,475,516 - BWI76_RS16770 0.75 -0.4

Or see this region's nucleotide sequence