Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13515

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13505 and BWI76_RS13510 are separated by 171 nucleotidesBWI76_RS13510 and BWI76_RS13515 are separated by 49 nucleotidesBWI76_RS13515 and BWI76_RS13520 are separated by 267 nucleotides BWI76_RS13505: BWI76_RS13505 - putative receptor, at 2,815,979 to 2,817,040 _RS13505 BWI76_RS13510: BWI76_RS13510 - YgdI/YgdR family lipoprotein, at 2,817,212 to 2,817,433 _RS13510 BWI76_RS13515: BWI76_RS13515 - amino acid permease, at 2,817,483 to 2,818,940 _RS13515 BWI76_RS13520: BWI76_RS13520 - hypothetical protein, at 2,819,208 to 2,819,747 _RS13520 Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2816.490 kb on + strand, within BWI76_RS13505at 2816.516 kb on + strand, within BWI76_RS13505at 2816.838 kb on + strandat 2816.894 kb on - strand, within BWI76_RS13505at 2816.938 kb on - strandat 2817.004 kb on + strandat 2817.049 kb on + strandat 2817.161 kb on - strandat 2817.188 kb on - strandat 2817.800 kb on - strand, within BWI76_RS13515at 2817.956 kb on - strand, within BWI76_RS13515at 2817.964 kb on + strand, within BWI76_RS13515at 2818.049 kb on + strand, within BWI76_RS13515at 2818.928 kb on + strandat 2819.035 kb on + strandat 2819.764 kb on + strandat 2819.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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2,816,490 + BWI76_RS13505 0.48 -0.2
2,816,516 + BWI76_RS13505 0.51 -0.1
2,816,838 + +2.9
2,816,894 - BWI76_RS13505 0.86 +1.2
2,816,938 - -0.5
2,817,004 + -0.4
2,817,049 + -0.7
2,817,161 - -0.4
2,817,188 - +1.0
2,817,800 - BWI76_RS13515 0.22 -0.7
2,817,956 - BWI76_RS13515 0.32 -0.1
2,817,964 + BWI76_RS13515 0.33 -2.2
2,818,049 + BWI76_RS13515 0.39 -0.5
2,818,928 + +0.9
2,819,035 + -0.2
2,819,764 + -0.7
2,819,772 - +0.3

Or see this region's nucleotide sequence