Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12705

Experiment: K. M5a1 KLEB23 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12695 and BWI76_RS12700 are separated by 277 nucleotidesBWI76_RS12700 and BWI76_RS12705 overlap by 50 nucleotidesBWI76_RS12705 and BWI76_RS12710 are separated by 43 nucleotides BWI76_RS12695: BWI76_RS12695 - zinc transporter ZntB, at 2,646,758 to 2,647,741 _RS12695 BWI76_RS12700: BWI76_RS12700 - hypothetical protein, at 2,648,019 to 2,648,273 _RS12700 BWI76_RS12705: BWI76_RS12705 - ATP-dependent RNA helicase, at 2,648,224 to 2,649,597 _RS12705 BWI76_RS12710: BWI76_RS12710 - tRNA 2-thiocytidine(32) synthetase TtcA, at 2,649,641 to 2,650,576 _RS12710 Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -1 0 1 2at 2647.398 kb on + strand, within BWI76_RS12695at 2647.475 kb on - strand, within BWI76_RS12695at 2647.581 kb on + strand, within BWI76_RS12695at 2647.706 kb on + strandat 2647.840 kb on + strandat 2647.864 kb on + strandat 2647.872 kb on - strandat 2648.068 kb on + strand, within BWI76_RS12700at 2648.076 kb on - strand, within BWI76_RS12700at 2648.396 kb on + strand, within BWI76_RS12705at 2648.424 kb on - strand, within BWI76_RS12705at 2648.438 kb on - strand, within BWI76_RS12705at 2648.438 kb on - strand, within BWI76_RS12705at 2648.662 kb on + strand, within BWI76_RS12705at 2648.673 kb on + strand, within BWI76_RS12705at 2648.815 kb on + strand, within BWI76_RS12705at 2649.044 kb on + strand, within BWI76_RS12705at 2649.044 kb on + strand, within BWI76_RS12705at 2649.533 kb on + strandat 2649.618 kb on - strandat 2649.618 kb on - strandat 2649.766 kb on + strand, within BWI76_RS12710at 2649.825 kb on - strand, within BWI76_RS12710at 2649.843 kb on + strand, within BWI76_RS12710at 2649.878 kb on - strand, within BWI76_RS12710at 2649.944 kb on - strand, within BWI76_RS12710at 2650.099 kb on + strand, within BWI76_RS12710at 2650.159 kb on + strand, within BWI76_RS12710at 2650.198 kb on - strand, within BWI76_RS12710at 2650.426 kb on + strand, within BWI76_RS12710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
remove
2,647,398 + BWI76_RS12695 0.65 -0.9
2,647,475 - BWI76_RS12695 0.73 -0.3
2,647,581 + BWI76_RS12695 0.84 -0.3
2,647,706 + +0.6
2,647,840 + -0.1
2,647,864 + -0.8
2,647,872 - +0.7
2,648,068 + BWI76_RS12700 0.19 -0.1
2,648,076 - BWI76_RS12700 0.22 -0.7
2,648,396 + BWI76_RS12705 0.13 -0.2
2,648,424 - BWI76_RS12705 0.15 -0.8
2,648,438 - BWI76_RS12705 0.16 -0.3
2,648,438 - BWI76_RS12705 0.16 -0.3
2,648,662 + BWI76_RS12705 0.32 +0.1
2,648,673 + BWI76_RS12705 0.33 -1.1
2,648,815 + BWI76_RS12705 0.43 -0.4
2,649,044 + BWI76_RS12705 0.60 -1.7
2,649,044 + BWI76_RS12705 0.60 -0.7
2,649,533 + +0.0
2,649,618 - -0.1
2,649,618 - +2.4
2,649,766 + BWI76_RS12710 0.13 -0.6
2,649,825 - BWI76_RS12710 0.20 +0.3
2,649,843 + BWI76_RS12710 0.22 +0.1
2,649,878 - BWI76_RS12710 0.25 +0.0
2,649,944 - BWI76_RS12710 0.32 -1.0
2,650,099 + BWI76_RS12710 0.49 +0.2
2,650,159 + BWI76_RS12710 0.55 +0.1
2,650,198 - BWI76_RS12710 0.60 +0.2
2,650,426 + BWI76_RS12710 0.84 -0.9

Or see this region's nucleotide sequence