Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10825

Experiment: K. M5a1 KLEB23 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10820 and BWI76_RS10825 are separated by 4 nucleotidesBWI76_RS10825 and BWI76_RS10830 are separated by 233 nucleotides BWI76_RS10820: BWI76_RS10820 - iron uptake system protein EfeO, at 2,286,296 to 2,287,423 _RS10820 BWI76_RS10825: BWI76_RS10825 - deferrochelatase/peroxidase EfeB, at 2,287,428 to 2,288,708 _RS10825 BWI76_RS10830: BWI76_RS10830 - phosphate starvation-inducible protein PhoH, at 2,288,942 to 2,290,006 _RS10830 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -1 0 1 2 3 4at 2286.677 kb on + strand, within BWI76_RS10820at 2286.695 kb on - strand, within BWI76_RS10820at 2286.761 kb on + strand, within BWI76_RS10820at 2286.807 kb on - strand, within BWI76_RS10820at 2287.341 kb on - strandat 2287.424 kb on + strandat 2287.655 kb on - strand, within BWI76_RS10825at 2287.747 kb on - strand, within BWI76_RS10825at 2288.336 kb on - strand, within BWI76_RS10825at 2288.580 kb on + strand, within BWI76_RS10825at 2288.675 kb on + strandat 2288.911 kb on - strandat 2288.981 kb on - strandat 2288.982 kb on + strandat 2289.081 kb on - strand, within BWI76_RS10830at 2289.090 kb on + strand, within BWI76_RS10830at 2289.189 kb on + strand, within BWI76_RS10830at 2289.234 kb on - strand, within BWI76_RS10830at 2289.537 kb on - strand, within BWI76_RS10830at 2289.668 kb on + strand, within BWI76_RS10830at 2289.708 kb on - strand, within BWI76_RS10830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
remove
2,286,677 + BWI76_RS10820 0.34 -1.1
2,286,695 - BWI76_RS10820 0.35 -0.0
2,286,761 + BWI76_RS10820 0.41 +2.1
2,286,807 - BWI76_RS10820 0.45 -0.2
2,287,341 - -0.3
2,287,424 + -0.1
2,287,655 - BWI76_RS10825 0.18 -0.5
2,287,747 - BWI76_RS10825 0.25 -1.1
2,288,336 - BWI76_RS10825 0.71 -1.2
2,288,580 + BWI76_RS10825 0.90 -0.6
2,288,675 + -0.1
2,288,911 - -0.2
2,288,981 - +2.2
2,288,982 + -1.2
2,289,081 - BWI76_RS10830 0.13 -0.3
2,289,090 + BWI76_RS10830 0.14 -0.2
2,289,189 + BWI76_RS10830 0.23 -0.3
2,289,234 - BWI76_RS10830 0.27 +3.9
2,289,537 - BWI76_RS10830 0.56 -0.2
2,289,668 + BWI76_RS10830 0.68 +0.1
2,289,708 - BWI76_RS10830 0.72 -0.6

Or see this region's nucleotide sequence