Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05615

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05610 and BWI76_RS05615 overlap by 11 nucleotidesBWI76_RS05615 and BWI76_RS05620 are separated by 320 nucleotides BWI76_RS05610: BWI76_RS05610 - capsular polysaccharide synthesis protein CpsB, at 1,175,560 to 1,176,846 _RS05610 BWI76_RS05615: BWI76_RS05615 - undecaprenyl-phosphate glucose phosphotransferase, at 1,176,836 to 1,178,239 _RS05615 BWI76_RS05620: BWI76_RS05620 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,178,560 to 1,180,008 _RS05620 Position (kb) 1176 1177 1178 1179Strain fitness (log2 ratio) -3 -2 -1 0 1at 1175.840 kb on + strand, within BWI76_RS05610at 1175.840 kb on + strand, within BWI76_RS05610at 1175.840 kb on + strand, within BWI76_RS05610at 1175.840 kb on + strand, within BWI76_RS05610at 1175.845 kb on + strand, within BWI76_RS05610at 1175.848 kb on - strand, within BWI76_RS05610at 1175.848 kb on - strand, within BWI76_RS05610at 1175.848 kb on - strand, within BWI76_RS05610at 1175.848 kb on - strand, within BWI76_RS05610at 1175.850 kb on + strand, within BWI76_RS05610at 1175.858 kb on - strand, within BWI76_RS05610at 1175.859 kb on - strand, within BWI76_RS05610at 1175.916 kb on + strand, within BWI76_RS05610at 1175.936 kb on + strand, within BWI76_RS05610at 1175.944 kb on - strand, within BWI76_RS05610at 1176.023 kb on + strand, within BWI76_RS05610at 1176.033 kb on + strand, within BWI76_RS05610at 1176.096 kb on - strandat 1176.137 kb on - strand, within BWI76_RS05610at 1176.144 kb on + strand, within BWI76_RS05610at 1176.144 kb on + strand, within BWI76_RS05610at 1176.156 kb on + strand, within BWI76_RS05610at 1176.267 kb on + strand, within BWI76_RS05610at 1176.361 kb on - strand, within BWI76_RS05610at 1176.709 kb on - strand, within BWI76_RS05610at 1176.773 kb on + strandat 1176.773 kb on + strandat 1176.781 kb on - strandat 1176.805 kb on - strandat 1176.811 kb on + strandat 1176.913 kb on + strandat 1176.914 kb on - strandat 1177.080 kb on + strand, within BWI76_RS05615at 1177.080 kb on - strand, within BWI76_RS05615at 1177.088 kb on - strand, within BWI76_RS05615at 1177.088 kb on - strand, within BWI76_RS05615at 1177.118 kb on - strand, within BWI76_RS05615at 1177.118 kb on - strand, within BWI76_RS05615at 1177.211 kb on + strand, within BWI76_RS05615at 1177.216 kb on + strand, within BWI76_RS05615at 1177.226 kb on + strand, within BWI76_RS05615at 1177.253 kb on - strand, within BWI76_RS05615at 1177.253 kb on - strand, within BWI76_RS05615at 1177.306 kb on + strand, within BWI76_RS05615at 1177.306 kb on + strand, within BWI76_RS05615at 1177.306 kb on + strand, within BWI76_RS05615at 1177.314 kb on - strand, within BWI76_RS05615at 1177.327 kb on + strand, within BWI76_RS05615at 1177.327 kb on + strand, within BWI76_RS05615at 1177.327 kb on + strand, within BWI76_RS05615at 1177.327 kb on + strand, within BWI76_RS05615at 1177.327 kb on + strand, within BWI76_RS05615at 1177.327 kb on + strand, within BWI76_RS05615at 1177.335 kb on - strand, within BWI76_RS05615at 1177.335 kb on - strand, within BWI76_RS05615at 1177.335 kb on - strand, within BWI76_RS05615at 1177.415 kb on - strand, within BWI76_RS05615at 1177.417 kb on - strand, within BWI76_RS05615at 1177.417 kb on - strand, within BWI76_RS05615at 1177.483 kb on + strand, within BWI76_RS05615at 1177.513 kb on + strand, within BWI76_RS05615at 1177.534 kb on - strand, within BWI76_RS05615at 1177.539 kb on - strand, within BWI76_RS05615at 1177.602 kb on + strand, within BWI76_RS05615at 1177.602 kb on + strand, within BWI76_RS05615at 1177.610 kb on - strand, within BWI76_RS05615at 1177.610 kb on - strand, within BWI76_RS05615at 1177.626 kb on + strand, within BWI76_RS05615at 1177.671 kb on + strand, within BWI76_RS05615at 1177.686 kb on - strand, within BWI76_RS05615at 1177.689 kb on - strand, within BWI76_RS05615at 1177.691 kb on + strand, within BWI76_RS05615at 1177.699 kb on - strand, within BWI76_RS05615at 1177.701 kb on + strand, within BWI76_RS05615at 1177.709 kb on - strand, within BWI76_RS05615at 1177.716 kb on - strand, within BWI76_RS05615at 1177.738 kb on + strand, within BWI76_RS05615at 1177.739 kb on + strand, within BWI76_RS05615at 1177.746 kb on + strand, within BWI76_RS05615at 1177.746 kb on + strand, within BWI76_RS05615at 1177.746 kb on - strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.747 kb on + strand, within BWI76_RS05615at 1177.754 kb on - strand, within BWI76_RS05615at 1177.754 kb on - strand, within BWI76_RS05615at 1177.754 kb on - strand, within BWI76_RS05615at 1177.754 kb on - strand, within BWI76_RS05615at 1177.756 kb on + strand, within BWI76_RS05615at 1177.764 kb on - strand, within BWI76_RS05615at 1177.783 kb on + strand, within BWI76_RS05615at 1177.790 kb on + strand, within BWI76_RS05615at 1177.790 kb on + strand, within BWI76_RS05615at 1177.790 kb on + strand, within BWI76_RS05615at 1177.791 kb on - strandat 1177.791 kb on - strandat 1177.791 kb on - strand, within BWI76_RS05615at 1177.792 kb on + strand, within BWI76_RS05615at 1177.840 kb on - strand, within BWI76_RS05615at 1177.840 kb on - strand, within BWI76_RS05615at 1177.840 kb on - strand, within BWI76_RS05615at 1177.883 kb on - strand, within BWI76_RS05615at 1177.909 kb on + strand, within BWI76_RS05615at 1177.912 kb on + strand, within BWI76_RS05615at 1177.931 kb on - strand, within BWI76_RS05615at 1177.950 kb on - strand, within BWI76_RS05615at 1177.992 kb on + strand, within BWI76_RS05615at 1177.992 kb on + strand, within BWI76_RS05615at 1177.992 kb on + strand, within BWI76_RS05615at 1178.000 kb on - strand, within BWI76_RS05615at 1178.028 kb on + strand, within BWI76_RS05615at 1178.028 kb on + strand, within BWI76_RS05615at 1178.036 kb on - strand, within BWI76_RS05615at 1178.043 kb on + strand, within BWI76_RS05615at 1178.043 kb on + strand, within BWI76_RS05615at 1178.043 kb on + strandat 1178.043 kb on + strand, within BWI76_RS05615at 1178.043 kb on + strand, within BWI76_RS05615at 1178.043 kb on + strand, within BWI76_RS05615at 1178.046 kb on - strand, within BWI76_RS05615at 1178.046 kb on - strand, within BWI76_RS05615at 1178.051 kb on - strand, within BWI76_RS05615at 1178.105 kb on + strandat 1178.109 kb on - strandat 1178.113 kb on - strandat 1178.115 kb on + strandat 1178.115 kb on + strandat 1178.122 kb on - strandat 1178.218 kb on + strandat 1178.258 kb on - strandat 1178.258 kb on - strandat 1178.262 kb on + strandat 1178.272 kb on + strandat 1178.280 kb on - strandat 1178.301 kb on - strandat 1178.337 kb on + strandat 1178.360 kb on - strandat 1178.369 kb on + strandat 1178.379 kb on + strandat 1178.379 kb on + strandat 1178.379 kb on + strandat 1178.387 kb on - strandat 1178.401 kb on + strandat 1178.414 kb on + strandat 1178.454 kb on + strandat 1178.456 kb on + strandat 1178.466 kb on + strandat 1178.466 kb on + strandat 1178.472 kb on + strandat 1178.472 kb on + strandat 1178.481 kb on + strandat 1178.487 kb on + strandat 1178.487 kb on + strandat 1178.487 kb on + strandat 1178.494 kb on + strandat 1178.495 kb on - strandat 1178.495 kb on - strandat 1178.502 kb on - strandat 1178.527 kb on + strandat 1178.544 kb on - strandat 1178.598 kb on + strandat 1178.603 kb on + strandat 1178.603 kb on + strandat 1178.605 kb on + strandat 1178.606 kb on - strandat 1178.606 kb on - strandat 1178.606 kb on - strandat 1178.618 kb on - strandat 1178.618 kb on - strandat 1178.619 kb on - strandat 1178.674 kb on + strandat 1178.697 kb on - strandat 1178.707 kb on + strand, within BWI76_RS05620at 1178.707 kb on - strand, within BWI76_RS05620at 1178.759 kb on - strand, within BWI76_RS05620at 1178.783 kb on + strand, within BWI76_RS05620at 1178.783 kb on + strand, within BWI76_RS05620at 1178.783 kb on + strand, within BWI76_RS05620at 1178.819 kb on - strand, within BWI76_RS05620at 1178.841 kb on + strand, within BWI76_RS05620at 1178.841 kb on + strand, within BWI76_RS05620at 1178.922 kb on + strand, within BWI76_RS05620at 1178.922 kb on + strand, within BWI76_RS05620at 1178.942 kb on + strand, within BWI76_RS05620at 1178.957 kb on + strand, within BWI76_RS05620at 1178.957 kb on + strand, within BWI76_RS05620at 1178.965 kb on - strand, within BWI76_RS05620at 1178.975 kb on + strand, within BWI76_RS05620at 1179.145 kb on + strand, within BWI76_RS05620

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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1,175,840 + BWI76_RS05610 0.22 +0.0
1,175,840 + BWI76_RS05610 0.22 +0.5
1,175,840 + BWI76_RS05610 0.22 +0.4
1,175,840 + BWI76_RS05610 0.22 +0.8
1,175,845 + BWI76_RS05610 0.22 -0.1
1,175,848 - BWI76_RS05610 0.22 -0.4
1,175,848 - BWI76_RS05610 0.22 -0.0
1,175,848 - BWI76_RS05610 0.22 +0.0
1,175,848 - BWI76_RS05610 0.22 +0.4
1,175,850 + BWI76_RS05610 0.23 -0.2
1,175,858 - BWI76_RS05610 0.23 +0.1
1,175,859 - BWI76_RS05610 0.23 -0.6
1,175,916 + BWI76_RS05610 0.28 -0.5
1,175,936 + BWI76_RS05610 0.29 +0.9
1,175,944 - BWI76_RS05610 0.30 +0.1
1,176,023 + BWI76_RS05610 0.36 +0.2
1,176,033 + BWI76_RS05610 0.37 +0.1
1,176,096 - +0.7
1,176,137 - BWI76_RS05610 0.45 +0.3
1,176,144 + BWI76_RS05610 0.45 +0.2
1,176,144 + BWI76_RS05610 0.45 -1.0
1,176,156 + BWI76_RS05610 0.46 +0.0
1,176,267 + BWI76_RS05610 0.55 -0.7
1,176,361 - BWI76_RS05610 0.62 -0.4
1,176,709 - BWI76_RS05610 0.89 -0.5
1,176,773 + +0.9
1,176,773 + +0.2
1,176,781 - -0.1
1,176,805 - -0.2
1,176,811 + -0.3
1,176,913 + -1.2
1,176,914 - -1.4
1,177,080 + BWI76_RS05615 0.17 -0.0
1,177,080 - BWI76_RS05615 0.17 +0.1
1,177,088 - BWI76_RS05615 0.18 -1.5
1,177,088 - BWI76_RS05615 0.18 -0.5
1,177,118 - BWI76_RS05615 0.20 -0.7
1,177,118 - BWI76_RS05615 0.20 -0.5
1,177,211 + BWI76_RS05615 0.27 +1.2
1,177,216 + BWI76_RS05615 0.27 -0.3
1,177,226 + BWI76_RS05615 0.28 -0.6
1,177,253 - BWI76_RS05615 0.30 -1.7
1,177,253 - BWI76_RS05615 0.30 -1.1
1,177,306 + BWI76_RS05615 0.33 -1.1
1,177,306 + BWI76_RS05615 0.33 -0.8
1,177,306 + BWI76_RS05615 0.33 +0.5
1,177,314 - BWI76_RS05615 0.34 -0.2
1,177,327 + BWI76_RS05615 0.35 -1.1
1,177,327 + BWI76_RS05615 0.35 -0.4
1,177,327 + BWI76_RS05615 0.35 -0.8
1,177,327 + BWI76_RS05615 0.35 -1.1
1,177,327 + BWI76_RS05615 0.35 -0.3
1,177,327 + BWI76_RS05615 0.35 -1.6
1,177,335 - BWI76_RS05615 0.36 -0.8
1,177,335 - BWI76_RS05615 0.36 -0.3
1,177,335 - BWI76_RS05615 0.36 -1.4
1,177,415 - BWI76_RS05615 0.41 +0.4
1,177,417 - BWI76_RS05615 0.41 -0.3
1,177,417 - BWI76_RS05615 0.41 -0.9
1,177,483 + BWI76_RS05615 0.46 +0.4
1,177,513 + BWI76_RS05615 0.48 +0.1
1,177,534 - BWI76_RS05615 0.50 -0.6
1,177,539 - BWI76_RS05615 0.50 -0.4
1,177,602 + BWI76_RS05615 0.55 -0.9
1,177,602 + BWI76_RS05615 0.55 -0.1
1,177,610 - BWI76_RS05615 0.55 -0.3
1,177,610 - BWI76_RS05615 0.55 -0.6
1,177,626 + BWI76_RS05615 0.56 +0.7
1,177,671 + BWI76_RS05615 0.59 -0.2
1,177,686 - BWI76_RS05615 0.61 -0.2
1,177,689 - BWI76_RS05615 0.61 -0.5
1,177,691 + BWI76_RS05615 0.61 -1.6
1,177,699 - BWI76_RS05615 0.61 -0.3
1,177,701 + BWI76_RS05615 0.62 -0.5
1,177,709 - BWI76_RS05615 0.62 -0.6
1,177,716 - BWI76_RS05615 0.63 +0.3
1,177,738 + BWI76_RS05615 0.64 -1.6
1,177,739 + BWI76_RS05615 0.64 -0.4
1,177,746 + BWI76_RS05615 0.65 +0.2
1,177,746 + BWI76_RS05615 0.65 -1.1
1,177,746 - BWI76_RS05615 0.65 -0.0
1,177,747 + BWI76_RS05615 0.65 -0.7
1,177,747 + BWI76_RS05615 0.65 -0.1
1,177,747 + BWI76_RS05615 0.65 -1.1
1,177,747 + BWI76_RS05615 0.65 -0.8
1,177,747 + BWI76_RS05615 0.65 +0.4
1,177,747 + BWI76_RS05615 0.65 -1.2
1,177,747 + BWI76_RS05615 0.65 -0.9
1,177,747 + BWI76_RS05615 0.65 -0.2
1,177,754 - BWI76_RS05615 0.65 +0.2
1,177,754 - BWI76_RS05615 0.65 -2.6
1,177,754 - BWI76_RS05615 0.65 -1.6
1,177,754 - BWI76_RS05615 0.65 -0.3
1,177,756 + BWI76_RS05615 0.66 +0.0
1,177,764 - BWI76_RS05615 0.66 -0.2
1,177,783 + BWI76_RS05615 0.67 -0.3
1,177,790 + BWI76_RS05615 0.68 +0.4
1,177,790 + BWI76_RS05615 0.68 -1.1
1,177,790 + BWI76_RS05615 0.68 -1.5
1,177,791 - +0.1
1,177,791 - +0.7
1,177,791 - BWI76_RS05615 0.68 -3.1
1,177,792 + BWI76_RS05615 0.68 -0.3
1,177,840 - BWI76_RS05615 0.72 -0.3
1,177,840 - BWI76_RS05615 0.72 -0.7
1,177,840 - BWI76_RS05615 0.72 +0.5
1,177,883 - BWI76_RS05615 0.75 -0.2
1,177,909 + BWI76_RS05615 0.76 -0.6
1,177,912 + BWI76_RS05615 0.77 -0.4
1,177,931 - BWI76_RS05615 0.78 -0.1
1,177,950 - BWI76_RS05615 0.79 -1.4
1,177,992 + BWI76_RS05615 0.82 -1.1
1,177,992 + BWI76_RS05615 0.82 +1.7
1,177,992 + BWI76_RS05615 0.82 -0.3
1,178,000 - BWI76_RS05615 0.83 -0.3
1,178,028 + BWI76_RS05615 0.85 -1.2
1,178,028 + BWI76_RS05615 0.85 +0.7
1,178,036 - BWI76_RS05615 0.85 -0.5
1,178,043 + BWI76_RS05615 0.86 -0.7
1,178,043 + BWI76_RS05615 0.86 +1.3
1,178,043 + +0.1
1,178,043 + BWI76_RS05615 0.86 +0.1
1,178,043 + BWI76_RS05615 0.86 -1.9
1,178,043 + BWI76_RS05615 0.86 -2.7
1,178,046 - BWI76_RS05615 0.86 -1.2
1,178,046 - BWI76_RS05615 0.86 -0.4
1,178,051 - BWI76_RS05615 0.87 +0.1
1,178,105 + -0.1
1,178,109 - -1.8
1,178,113 - -1.2
1,178,115 + -1.8
1,178,115 + +0.5
1,178,122 - -1.7
1,178,218 + -1.0
1,178,258 - -0.3
1,178,258 - -0.5
1,178,262 + -1.0
1,178,272 + -0.1
1,178,280 - +0.0
1,178,301 - -1.4
1,178,337 + -0.8
1,178,360 - -0.0
1,178,369 + -0.4
1,178,379 + -1.1
1,178,379 + +0.1
1,178,379 + -1.2
1,178,387 - +0.4
1,178,401 + -0.2
1,178,414 + -0.6
1,178,454 + -1.1
1,178,456 + +0.4
1,178,466 + -0.4
1,178,466 + -0.5
1,178,472 + +0.7
1,178,472 + -0.2
1,178,481 + -0.2
1,178,487 + -0.0
1,178,487 + -1.3
1,178,487 + +1.7
1,178,494 + -0.7
1,178,495 - +1.7
1,178,495 - +0.5
1,178,502 - +1.7
1,178,527 + -2.3
1,178,544 - -0.8
1,178,598 + -0.6
1,178,603 + -0.4
1,178,603 + -0.2
1,178,605 + -1.0
1,178,606 - -0.1
1,178,606 - -0.1
1,178,606 - +0.8
1,178,618 - -0.5
1,178,618 - +1.2
1,178,619 - -0.4
1,178,674 + -0.6
1,178,697 - -0.5
1,178,707 + BWI76_RS05620 0.10 -0.9
1,178,707 - BWI76_RS05620 0.10 -0.2
1,178,759 - BWI76_RS05620 0.14 -0.3
1,178,783 + BWI76_RS05620 0.15 -0.4
1,178,783 + BWI76_RS05620 0.15 -0.6
1,178,783 + BWI76_RS05620 0.15 -0.9
1,178,819 - BWI76_RS05620 0.18 +0.2
1,178,841 + BWI76_RS05620 0.19 -0.1
1,178,841 + BWI76_RS05620 0.19 -0.4
1,178,922 + BWI76_RS05620 0.25 -0.6
1,178,922 + BWI76_RS05620 0.25 +0.0
1,178,942 + BWI76_RS05620 0.26 -0.6
1,178,957 + BWI76_RS05620 0.27 -0.1
1,178,957 + BWI76_RS05620 0.27 -0.6
1,178,965 - BWI76_RS05620 0.28 -0.1
1,178,975 + BWI76_RS05620 0.29 -1.1
1,179,145 + BWI76_RS05620 0.40 -0.5

Or see this region's nucleotide sequence