Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24405

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24400 and BWI76_RS24405 are separated by 169 nucleotidesBWI76_RS24405 and BWI76_RS24410 are separated by 5 nucleotides BWI76_RS24400: BWI76_RS24400 - outer membrane channel protein TolC, at 5,085,527 to 5,086,975 _RS24400 BWI76_RS24405: BWI76_RS24405 - hypothetical protein, at 5,087,145 to 5,087,813 _RS24405 BWI76_RS24410: BWI76_RS24410 - putative glutathione-like synthetase, at 5,087,819 to 5,088,979 _RS24410 Position (kb) 5087 5088Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5086.236 kb on - strand, within BWI76_RS24400at 5086.322 kb on - strand, within BWI76_RS24400at 5086.391 kb on - strand, within BWI76_RS24400at 5086.435 kb on - strand, within BWI76_RS24400at 5086.527 kb on - strand, within BWI76_RS24400at 5086.532 kb on + strand, within BWI76_RS24400at 5086.542 kb on - strand, within BWI76_RS24400at 5086.563 kb on + strand, within BWI76_RS24400at 5086.633 kb on - strand, within BWI76_RS24400at 5086.719 kb on - strand, within BWI76_RS24400at 5086.719 kb on - strand, within BWI76_RS24400at 5086.719 kb on - strand, within BWI76_RS24400at 5086.961 kb on - strandat 5087.005 kb on + strandat 5087.037 kb on - strandat 5087.037 kb on - strandat 5087.092 kb on + strandat 5087.095 kb on - strandat 5087.100 kb on - strandat 5087.323 kb on + strand, within BWI76_RS24405at 5087.343 kb on + strand, within BWI76_RS24405at 5087.343 kb on + strand, within BWI76_RS24405at 5087.351 kb on - strand, within BWI76_RS24405at 5087.405 kb on - strand, within BWI76_RS24405at 5087.579 kb on - strand, within BWI76_RS24405at 5087.644 kb on + strand, within BWI76_RS24405at 5087.649 kb on + strand, within BWI76_RS24405at 5087.711 kb on - strand, within BWI76_RS24405at 5087.768 kb on - strandat 5087.973 kb on + strand, within BWI76_RS24410at 5087.973 kb on + strand, within BWI76_RS24410at 5088.138 kb on + strand, within BWI76_RS24410at 5088.405 kb on - strand, within BWI76_RS24410at 5088.555 kb on - strand, within BWI76_RS24410at 5088.642 kb on - strand, within BWI76_RS24410at 5088.728 kb on + strand, within BWI76_RS24410

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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5,086,236 - BWI76_RS24400 0.49 -2.5
5,086,322 - BWI76_RS24400 0.55 -1.1
5,086,391 - BWI76_RS24400 0.60 +1.5
5,086,435 - BWI76_RS24400 0.63 +1.1
5,086,527 - BWI76_RS24400 0.69 -0.4
5,086,532 + BWI76_RS24400 0.69 -0.9
5,086,542 - BWI76_RS24400 0.70 -1.5
5,086,563 + BWI76_RS24400 0.71 +1.3
5,086,633 - BWI76_RS24400 0.76 -0.5
5,086,719 - BWI76_RS24400 0.82 -0.5
5,086,719 - BWI76_RS24400 0.82 +2.1
5,086,719 - BWI76_RS24400 0.82 -1.1
5,086,961 - +0.7
5,087,005 + -1.1
5,087,037 - -0.8
5,087,037 - +1.0
5,087,092 + -0.2
5,087,095 - +0.3
5,087,100 - +1.0
5,087,323 + BWI76_RS24405 0.27 +1.0
5,087,343 + BWI76_RS24405 0.30 -0.6
5,087,343 + BWI76_RS24405 0.30 -0.2
5,087,351 - BWI76_RS24405 0.31 -1.1
5,087,405 - BWI76_RS24405 0.39 -1.5
5,087,579 - BWI76_RS24405 0.65 -2.7
5,087,644 + BWI76_RS24405 0.75 -0.1
5,087,649 + BWI76_RS24405 0.75 -0.6
5,087,711 - BWI76_RS24405 0.85 -3.0
5,087,768 - +0.5
5,087,973 + BWI76_RS24410 0.13 -0.1
5,087,973 + BWI76_RS24410 0.13 -0.3
5,088,138 + BWI76_RS24410 0.27 -0.2
5,088,405 - BWI76_RS24410 0.50 -1.2
5,088,555 - BWI76_RS24410 0.63 -0.6
5,088,642 - BWI76_RS24410 0.71 +0.5
5,088,728 + BWI76_RS24410 0.78 -0.3

Or see this region's nucleotide sequence