Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22515

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22505 and BWI76_RS22510 are separated by 1 nucleotidesBWI76_RS22510 and BWI76_RS22515 are separated by 16 nucleotidesBWI76_RS22515 and BWI76_RS22520 overlap by 4 nucleotides BWI76_RS22505: BWI76_RS22505 - 3-oxoacyl-ACP reductase, at 4,691,675 to 4,692,406 _RS22505 BWI76_RS22510: BWI76_RS22510 - hypothetical protein, at 4,692,408 to 4,692,659 _RS22510 BWI76_RS22515: BWI76_RS22515 - acyl dehydratase, at 4,692,676 to 4,693,482 _RS22515 BWI76_RS22520: BWI76_RS22520 - 3-oxoacyl-ACP synthase, at 4,693,479 to 4,694,732 _RS22520 Position (kb) 4692 4693 4694Strain fitness (log2 ratio) -3 -2 -1 0 1at 4691.679 kb on - strandat 4691.698 kb on + strandat 4691.701 kb on - strandat 4691.704 kb on + strandat 4691.704 kb on + strandat 4691.712 kb on - strandat 4691.719 kb on + strandat 4691.723 kb on - strandat 4691.723 kb on - strandat 4691.756 kb on + strand, within BWI76_RS22505at 4691.784 kb on - strand, within BWI76_RS22505at 4691.784 kb on - strand, within BWI76_RS22505at 4691.784 kb on - strand, within BWI76_RS22505at 4691.975 kb on + strand, within BWI76_RS22505at 4691.983 kb on - strand, within BWI76_RS22505at 4691.983 kb on - strand, within BWI76_RS22505at 4692.044 kb on - strand, within BWI76_RS22505at 4692.127 kb on - strand, within BWI76_RS22505at 4692.244 kb on - strand, within BWI76_RS22505at 4692.422 kb on + strandat 4692.441 kb on - strand, within BWI76_RS22510at 4692.950 kb on - strand, within BWI76_RS22515at 4693.031 kb on - strand, within BWI76_RS22515at 4693.172 kb on - strand, within BWI76_RS22515at 4693.292 kb on - strand, within BWI76_RS22515at 4693.462 kb on + strandat 4693.462 kb on + strandat 4693.554 kb on - strandat 4693.609 kb on - strand, within BWI76_RS22520at 4693.609 kb on - strand, within BWI76_RS22520at 4693.645 kb on + strand, within BWI76_RS22520at 4693.685 kb on - strand, within BWI76_RS22520at 4693.712 kb on - strand, within BWI76_RS22520at 4694.002 kb on - strand, within BWI76_RS22520at 4694.115 kb on + strand, within BWI76_RS22520at 4694.384 kb on - strand, within BWI76_RS22520

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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4,691,679 - -0.5
4,691,698 + +0.9
4,691,701 - +0.0
4,691,704 + -0.3
4,691,704 + -1.0
4,691,712 - +0.3
4,691,719 + +0.1
4,691,723 - -0.1
4,691,723 - +0.2
4,691,756 + BWI76_RS22505 0.11 -2.6
4,691,784 - BWI76_RS22505 0.15 +0.4
4,691,784 - BWI76_RS22505 0.15 -3.3
4,691,784 - BWI76_RS22505 0.15 +0.6
4,691,975 + BWI76_RS22505 0.41 +0.5
4,691,983 - BWI76_RS22505 0.42 -0.3
4,691,983 - BWI76_RS22505 0.42 +0.4
4,692,044 - BWI76_RS22505 0.50 -0.2
4,692,127 - BWI76_RS22505 0.62 -0.4
4,692,244 - BWI76_RS22505 0.78 -0.6
4,692,422 + +1.2
4,692,441 - BWI76_RS22510 0.13 +0.0
4,692,950 - BWI76_RS22515 0.34 -0.3
4,693,031 - BWI76_RS22515 0.44 -0.8
4,693,172 - BWI76_RS22515 0.61 -1.9
4,693,292 - BWI76_RS22515 0.76 -1.2
4,693,462 + +0.3
4,693,462 + -0.1
4,693,554 - -1.0
4,693,609 - BWI76_RS22520 0.10 -1.5
4,693,609 - BWI76_RS22520 0.10 -0.2
4,693,645 + BWI76_RS22520 0.13 +0.2
4,693,685 - BWI76_RS22520 0.16 -0.6
4,693,712 - BWI76_RS22520 0.19 +0.8
4,694,002 - BWI76_RS22520 0.42 -0.1
4,694,115 + BWI76_RS22520 0.51 -0.4
4,694,384 - BWI76_RS22520 0.72 +0.4

Or see this region's nucleotide sequence