Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19390

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19390 and BWI76_RS19395 are separated by 99 nucleotides BWI76_RS19390: BWI76_RS19390 - LysR family transcriptional regulator, at 4,043,767 to 4,044,714 _RS19390 BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625 _RS19395 Position (kb) 4043 4044 4045Strain fitness (log2 ratio) -2 -1 0 1at 4043.242 kb on - strandat 4043.285 kb on + strandat 4043.405 kb on + strandat 4043.800 kb on - strandat 4043.924 kb on + strand, within BWI76_RS19390at 4044.037 kb on - strand, within BWI76_RS19390at 4044.113 kb on + strand, within BWI76_RS19390at 4044.153 kb on - strand, within BWI76_RS19390at 4044.187 kb on - strand, within BWI76_RS19390at 4044.562 kb on + strand, within BWI76_RS19390at 4044.730 kb on - strandat 4044.764 kb on + strandat 4044.814 kb on - strandat 4045.078 kb on - strand, within BWI76_RS19395at 4045.363 kb on + strand, within BWI76_RS19395at 4045.402 kb on + strand, within BWI76_RS19395at 4045.569 kb on + strand, within BWI76_RS19395at 4045.695 kb on + strand, within BWI76_RS19395

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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4,043,242 - -1.4
4,043,285 + -0.5
4,043,405 + -0.2
4,043,800 - -0.0
4,043,924 + BWI76_RS19390 0.17 -1.1
4,044,037 - BWI76_RS19390 0.28 -0.6
4,044,113 + BWI76_RS19390 0.36 -0.1
4,044,153 - BWI76_RS19390 0.41 -0.0
4,044,187 - BWI76_RS19390 0.44 -0.4
4,044,562 + BWI76_RS19390 0.84 -1.9
4,044,730 - -1.1
4,044,764 + +0.1
4,044,814 - -0.3
4,045,078 - BWI76_RS19395 0.15 +0.1
4,045,363 + BWI76_RS19395 0.30 -0.0
4,045,402 + BWI76_RS19395 0.32 -0.1
4,045,569 + BWI76_RS19395 0.42 -0.2
4,045,695 + BWI76_RS19395 0.49 +0.3

Or see this region's nucleotide sequence