Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18005

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18000 and BWI76_RS18005 are separated by 115 nucleotidesBWI76_RS18005 and BWI76_RS18010 are separated by 97 nucleotidesBWI76_RS18010 and BWI76_RS18015 overlap by 4 nucleotides BWI76_RS18000: BWI76_RS18000 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 3,741,442 to 3,742,917 _RS18000 BWI76_RS18005: BWI76_RS18005 - hypothetical protein, at 3,743,033 to 3,743,272 _RS18005 BWI76_RS18010: BWI76_RS18010 - hypothetical protein, at 3,743,370 to 3,743,561 _RS18010 BWI76_RS18015: BWI76_RS18015 - serine/threonine-protein phosphatase, at 3,743,558 to 3,744,211 _RS18015 Position (kb) 3743 3744Strain fitness (log2 ratio) -2 -1 0 1at 3742.331 kb on - strand, within BWI76_RS18000at 3742.387 kb on + strand, within BWI76_RS18000at 3742.530 kb on + strand, within BWI76_RS18000at 3742.744 kb on + strand, within BWI76_RS18000at 3742.801 kb on + strandat 3743.072 kb on + strand, within BWI76_RS18005at 3743.084 kb on - strand, within BWI76_RS18005at 3743.084 kb on - strand, within BWI76_RS18005at 3743.096 kb on + strand, within BWI76_RS18005at 3743.201 kb on + strand, within BWI76_RS18005at 3743.336 kb on - strandat 3743.336 kb on - strandat 3743.385 kb on - strandat 3743.659 kb on + strand, within BWI76_RS18015at 3743.766 kb on - strand, within BWI76_RS18015at 3743.819 kb on + strand, within BWI76_RS18015at 3743.829 kb on - strand, within BWI76_RS18015at 3744.070 kb on - strand, within BWI76_RS18015at 3744.092 kb on + strand, within BWI76_RS18015at 3744.103 kb on + strand, within BWI76_RS18015at 3744.103 kb on + strand, within BWI76_RS18015at 3744.111 kb on - strand, within BWI76_RS18015at 3744.111 kb on - strand, within BWI76_RS18015at 3744.111 kb on - strand, within BWI76_RS18015at 3744.113 kb on + strand, within BWI76_RS18015at 3744.132 kb on - strand, within BWI76_RS18015at 3744.139 kb on - strand, within BWI76_RS18015at 3744.144 kb on + strand, within BWI76_RS18015at 3744.157 kb on - strandat 3744.157 kb on - strandat 3744.184 kb on + strandat 3744.192 kb on + strandat 3744.192 kb on + strandat 3744.258 kb on + strandat 3744.259 kb on + strandat 3744.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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3,742,331 - BWI76_RS18000 0.60 +0.3
3,742,387 + BWI76_RS18000 0.64 +0.4
3,742,530 + BWI76_RS18000 0.74 -2.0
3,742,744 + BWI76_RS18000 0.88 -0.1
3,742,801 + +0.0
3,743,072 + BWI76_RS18005 0.16 -0.6
3,743,084 - BWI76_RS18005 0.21 +0.3
3,743,084 - BWI76_RS18005 0.21 -1.1
3,743,096 + BWI76_RS18005 0.26 -1.2
3,743,201 + BWI76_RS18005 0.70 -0.2
3,743,336 - +0.2
3,743,336 - -0.2
3,743,385 - +0.4
3,743,659 + BWI76_RS18015 0.15 +0.8
3,743,766 - BWI76_RS18015 0.32 +0.5
3,743,819 + BWI76_RS18015 0.40 +0.1
3,743,829 - BWI76_RS18015 0.41 -0.3
3,744,070 - BWI76_RS18015 0.78 -0.0
3,744,092 + BWI76_RS18015 0.82 +1.4
3,744,103 + BWI76_RS18015 0.83 +0.0
3,744,103 + BWI76_RS18015 0.83 +0.4
3,744,111 - BWI76_RS18015 0.85 -0.0
3,744,111 - BWI76_RS18015 0.85 +0.6
3,744,111 - BWI76_RS18015 0.85 -0.4
3,744,113 + BWI76_RS18015 0.85 -0.4
3,744,132 - BWI76_RS18015 0.88 +1.3
3,744,139 - BWI76_RS18015 0.89 -0.3
3,744,144 + BWI76_RS18015 0.90 +0.7
3,744,157 - +0.2
3,744,157 - +0.1
3,744,184 + -0.1
3,744,192 + +0.2
3,744,192 + -0.3
3,744,258 + -0.1
3,744,259 + -0.7
3,744,261 + +0.2

Or see this region's nucleotide sequence