Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17315

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17295 and BWI76_RS17300 are separated by 35 nucleotidesBWI76_RS17300 and BWI76_RS17310 are separated by 282 nucleotidesBWI76_RS17310 and BWI76_RS17315 are separated by 107 nucleotidesBWI76_RS17315 and BWI76_RS17320 overlap by 4 nucleotidesBWI76_RS17320 and BWI76_RS17325 overlap by 1 nucleotides BWI76_RS17295: BWI76_RS17295 - tRNA-Tyr, at 3,583,462 to 3,583,546 _RS17295 BWI76_RS17300: BWI76_RS17300 - tRNA-Tyr, at 3,583,582 to 3,583,666 _RS17300 BWI76_RS17310: BWI76_RS17310 - AsnC family transcriptional regulator, at 3,583,949 to 3,584,392 _RS17310 BWI76_RS17315: BWI76_RS17315 - EamA family transporter, at 3,584,500 to 3,585,395 _RS17315 BWI76_RS17320: BWI76_RS17320 - respiratory nitrate reductase subunit gamma, at 3,585,392 to 3,586,069 _RS17320 BWI76_RS17325: BWI76_RS17325 - nitrate reductase molybdenum cofactor assembly chaperone, at 3,586,069 to 3,586,779 _RS17325 Position (kb) 3584 3585 3586Strain fitness (log2 ratio) -2 -1 0 1at 3583.607 kb on - strand, within BWI76_RS17300at 3583.622 kb on - strand, within BWI76_RS17300at 3583.819 kb on + strandat 3583.905 kb on + strandat 3583.967 kb on + strandat 3584.037 kb on + strand, within BWI76_RS17310at 3584.196 kb on + strand, within BWI76_RS17310at 3584.209 kb on - strand, within BWI76_RS17310at 3584.262 kb on - strand, within BWI76_RS17310at 3584.262 kb on - strand, within BWI76_RS17310at 3584.479 kb on - strandat 3584.626 kb on - strand, within BWI76_RS17315at 3584.697 kb on + strand, within BWI76_RS17315at 3584.793 kb on + strand, within BWI76_RS17315at 3584.798 kb on + strand, within BWI76_RS17315at 3584.801 kb on - strand, within BWI76_RS17315at 3584.807 kb on - strand, within BWI76_RS17315at 3585.328 kb on + strandat 3585.634 kb on + strand, within BWI76_RS17320at 3585.852 kb on + strand, within BWI76_RS17320at 3585.976 kb on - strand, within BWI76_RS17320

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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3,583,607 - BWI76_RS17300 0.29 -1.2
3,583,622 - BWI76_RS17300 0.47 +0.7
3,583,819 + -0.3
3,583,905 + -1.1
3,583,967 + -0.6
3,584,037 + BWI76_RS17310 0.20 +0.6
3,584,196 + BWI76_RS17310 0.56 -0.6
3,584,209 - BWI76_RS17310 0.59 +0.1
3,584,262 - BWI76_RS17310 0.70 +1.7
3,584,262 - BWI76_RS17310 0.70 -0.8
3,584,479 - -0.5
3,584,626 - BWI76_RS17315 0.14 -0.7
3,584,697 + BWI76_RS17315 0.22 -0.4
3,584,793 + BWI76_RS17315 0.33 -0.5
3,584,798 + BWI76_RS17315 0.33 -0.6
3,584,801 - BWI76_RS17315 0.34 -2.0
3,584,807 - BWI76_RS17315 0.34 +1.2
3,585,328 + +0.1
3,585,634 + BWI76_RS17320 0.36 -0.5
3,585,852 + BWI76_RS17320 0.68 -0.7
3,585,976 - BWI76_RS17320 0.86 -0.4

Or see this region's nucleotide sequence