Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10500

Experiment: K. M5a1 KLEB23 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10495 and BWI76_RS10500 are separated by 174 nucleotidesBWI76_RS10500 and BWI76_RS10505 are separated by 346 nucleotides BWI76_RS10495: BWI76_RS10495 - LysR family transcriptional regulator, at 2,217,554 to 2,218,492 _RS10495 BWI76_RS10500: BWI76_RS10500 - flavoprotein monooxygenase, at 2,218,667 to 2,219,821 _RS10500 BWI76_RS10505: BWI76_RS10505 - putative guanine/xanthin permease, at 2,220,168 to 2,221,550 _RS10505 Position (kb) 2218 2219 2220Strain fitness (log2 ratio) -2 -1 0 1at 2217.915 kb on + strand, within BWI76_RS10495at 2218.027 kb on - strand, within BWI76_RS10495at 2218.128 kb on + strand, within BWI76_RS10495at 2218.303 kb on + strand, within BWI76_RS10495at 2218.308 kb on + strand, within BWI76_RS10495at 2218.362 kb on + strand, within BWI76_RS10495at 2218.367 kb on + strand, within BWI76_RS10495at 2218.588 kb on - strandat 2218.588 kb on - strandat 2218.700 kb on - strandat 2218.771 kb on - strandat 2219.578 kb on + strand, within BWI76_RS10500at 2219.656 kb on - strand, within BWI76_RS10500at 2220.354 kb on - strand, within BWI76_RS10505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
remove
2,217,915 + BWI76_RS10495 0.38 -0.2
2,218,027 - BWI76_RS10495 0.50 -1.5
2,218,128 + BWI76_RS10495 0.61 -0.4
2,218,303 + BWI76_RS10495 0.80 -0.7
2,218,308 + BWI76_RS10495 0.80 +0.1
2,218,362 + BWI76_RS10495 0.86 -1.8
2,218,367 + BWI76_RS10495 0.87 -0.2
2,218,588 - -0.4
2,218,588 - -0.3
2,218,700 - -0.9
2,218,771 - +1.3
2,219,578 + BWI76_RS10500 0.79 -0.9
2,219,656 - BWI76_RS10500 0.86 -0.6
2,220,354 - BWI76_RS10505 0.13 +0.2

Or see this region's nucleotide sequence