Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08320

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08315 and BWI76_RS08320 are separated by 21 nucleotidesBWI76_RS08320 and BWI76_RS08325 overlap by 1 nucleotidesBWI76_RS08325 and BWI76_RS08330 are separated by 309 nucleotidesBWI76_RS08330 and BWI76_RS08335 are separated by 202 nucleotides BWI76_RS08315: BWI76_RS08315 - K+-transporting ATPase subunit B, at 1,759,594 to 1,761,642 _RS08315 BWI76_RS08320: BWI76_RS08320 - potassium-transporting ATPase subunit KdpA, at 1,761,664 to 1,763,343 _RS08320 BWI76_RS08325: BWI76_RS08325 - potassium-transporting ATPase subunit F, at 1,763,343 to 1,763,432 _RS08325 BWI76_RS08330: BWI76_RS08330 - hypothetical protein, at 1,763,742 to 1,763,948 _RS08330 BWI76_RS08335: BWI76_RS08335 - deoxyribodipyrimidine photo-lyase, at 1,764,151 to 1,765,593 _RS08335 Position (kb) 1761 1762 1763 1764Strain fitness (log2 ratio) -2 -1 0 1at 1760.825 kb on + strand, within BWI76_RS08315at 1761.348 kb on + strand, within BWI76_RS08315at 1761.442 kb on - strandat 1761.481 kb on + strandat 1761.591 kb on - strandat 1761.743 kb on + strandat 1761.988 kb on + strand, within BWI76_RS08320at 1762.134 kb on + strand, within BWI76_RS08320at 1762.265 kb on + strand, within BWI76_RS08320at 1762.265 kb on + strand, within BWI76_RS08320at 1762.753 kb on + strand, within BWI76_RS08320at 1762.831 kb on + strand, within BWI76_RS08320at 1763.466 kb on + strandat 1763.674 kb on + strandat 1763.674 kb on + strandat 1763.903 kb on + strand, within BWI76_RS08330at 1763.968 kb on + strandat 1763.984 kb on - strandat 1764.068 kb on - strandat 1764.085 kb on + strandat 1764.091 kb on + strandat 1764.093 kb on - strandat 1764.244 kb on - strandat 1764.305 kb on - strand, within BWI76_RS08335

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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1,760,825 + BWI76_RS08315 0.60 +1.0
1,761,348 + BWI76_RS08315 0.86 -0.4
1,761,442 - +1.1
1,761,481 + -1.1
1,761,591 - -0.1
1,761,743 + -0.4
1,761,988 + BWI76_RS08320 0.19 -1.9
1,762,134 + BWI76_RS08320 0.28 -1.0
1,762,265 + BWI76_RS08320 0.36 -0.1
1,762,265 + BWI76_RS08320 0.36 -0.1
1,762,753 + BWI76_RS08320 0.65 -1.2
1,762,831 + BWI76_RS08320 0.69 -1.7
1,763,466 + +0.6
1,763,674 + -0.0
1,763,674 + -0.4
1,763,903 + BWI76_RS08330 0.78 -0.5
1,763,968 + +0.0
1,763,984 - +0.2
1,764,068 - +0.4
1,764,085 + +0.1
1,764,091 + -0.4
1,764,093 - -0.2
1,764,244 - -0.2
1,764,305 - BWI76_RS08335 0.11 -0.5

Or see this region's nucleotide sequence