Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06865

Experiment: K. M5a1 KLEB23 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06860 and BWI76_RS06865 are separated by 163 nucleotidesBWI76_RS06865 and BWI76_RS06870 are separated by 115 nucleotidesBWI76_RS06870 and BWI76_RS06875 are separated by 201 nucleotides BWI76_RS06860: BWI76_RS06860 - MFS transporter, at 1,440,204 to 1,441,424 _RS06860 BWI76_RS06865: BWI76_RS06865 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 1,441,588 to 1,443,240 _RS06865 BWI76_RS06870: BWI76_RS06870 - aminoacyl-tRNA deacylase, at 1,443,356 to 1,443,835 _RS06870 BWI76_RS06875: BWI76_RS06875 - conjugal transfer protein TraB, at 1,444,037 to 1,444,831 _RS06875 Position (kb) 1441 1442 1443 1444Strain fitness (log2 ratio) -2 -1 0 1at 1440.769 kb on + strand, within BWI76_RS06860at 1440.848 kb on + strand, within BWI76_RS06860at 1440.991 kb on - strand, within BWI76_RS06860at 1441.071 kb on + strand, within BWI76_RS06860at 1441.117 kb on - strand, within BWI76_RS06860at 1441.117 kb on - strand, within BWI76_RS06860at 1441.124 kb on + strand, within BWI76_RS06860at 1441.132 kb on - strand, within BWI76_RS06860at 1441.132 kb on - strand, within BWI76_RS06860at 1441.214 kb on + strand, within BWI76_RS06860at 1441.217 kb on - strandat 1441.393 kb on + strandat 1441.393 kb on + strandat 1441.393 kb on + strandat 1441.398 kb on + strandat 1441.503 kb on - strandat 1441.773 kb on + strand, within BWI76_RS06865at 1442.267 kb on + strand, within BWI76_RS06865at 1442.695 kb on + strand, within BWI76_RS06865at 1442.863 kb on + strand, within BWI76_RS06865at 1442.886 kb on + strand, within BWI76_RS06865at 1442.943 kb on + strand, within BWI76_RS06865at 1443.032 kb on - strand, within BWI76_RS06865at 1443.048 kb on + strand, within BWI76_RS06865at 1443.169 kb on - strandat 1443.241 kb on + strandat 1443.249 kb on - strandat 1443.266 kb on + strandat 1443.478 kb on - strand, within BWI76_RS06870at 1443.714 kb on + strand, within BWI76_RS06870at 1443.721 kb on + strand, within BWI76_RS06870at 1443.864 kb on - strandat 1443.881 kb on - strandat 1443.917 kb on + strandat 1444.180 kb on + strand, within BWI76_RS06875at 1444.180 kb on + strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 0.1
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1,440,769 + BWI76_RS06860 0.46 -0.9
1,440,848 + BWI76_RS06860 0.53 -0.1
1,440,991 - BWI76_RS06860 0.64 +0.1
1,441,071 + BWI76_RS06860 0.71 -0.3
1,441,117 - BWI76_RS06860 0.75 -0.5
1,441,117 - BWI76_RS06860 0.75 -1.9
1,441,124 + BWI76_RS06860 0.75 +0.1
1,441,132 - BWI76_RS06860 0.76 -0.5
1,441,132 - BWI76_RS06860 0.76 -0.1
1,441,214 + BWI76_RS06860 0.83 +0.6
1,441,217 - -0.2
1,441,393 + +0.2
1,441,393 + +0.4
1,441,393 + -0.8
1,441,398 + +1.4
1,441,503 - -1.1
1,441,773 + BWI76_RS06865 0.11 -0.1
1,442,267 + BWI76_RS06865 0.41 -0.8
1,442,695 + BWI76_RS06865 0.67 -1.0
1,442,863 + BWI76_RS06865 0.77 -0.4
1,442,886 + BWI76_RS06865 0.79 -0.9
1,442,943 + BWI76_RS06865 0.82 +0.1
1,443,032 - BWI76_RS06865 0.87 +0.1
1,443,048 + BWI76_RS06865 0.88 -1.7
1,443,169 - -0.3
1,443,241 + -0.1
1,443,249 - +0.6
1,443,266 + -1.4
1,443,478 - BWI76_RS06870 0.25 +1.5
1,443,714 + BWI76_RS06870 0.75 -0.1
1,443,721 + BWI76_RS06870 0.76 +0.1
1,443,864 - +0.9
1,443,881 - +0.1
1,443,917 + +0.1
1,444,180 + BWI76_RS06875 0.18 -0.8
1,444,180 + BWI76_RS06875 0.18 -0.9
1,444,188 - BWI76_RS06875 0.19 +0.2
1,444,188 - BWI76_RS06875 0.19 +0.1
1,444,188 - BWI76_RS06875 0.19 +0.2
1,444,188 - BWI76_RS06875 0.19 -0.2
1,444,188 - BWI76_RS06875 0.19 +0.1

Or see this region's nucleotide sequence