Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26940 and BWI76_RS26945 are separated by 108 nucleotides BWI76_RS26945 and BWI76_RS26950 are separated by 3 nucleotides
BWI76_RS26940: BWI76_RS26940 - transcriptional regulator, at 5,588,562 to 5,589,578
_RS26940
BWI76_RS26945: BWI76_RS26945 - hypothetical protein, at 5,589,687 to 5,590,436
_RS26945
BWI76_RS26950: BWI76_RS26950 - 2-dehydro-3-deoxygluconokinase, at 5,590,440 to 5,591,378
_RS26950
Position (kb) 5589
5590
5591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5588.737 kb on + strand, within BWI76_RS26940 at 5588.845 kb on + strand, within BWI76_RS26940 at 5588.882 kb on + strand, within BWI76_RS26940 at 5588.897 kb on - strand, within BWI76_RS26940 at 5588.925 kb on - strand, within BWI76_RS26940 at 5589.053 kb on + strand, within BWI76_RS26940 at 5589.152 kb on - strand, within BWI76_RS26940 at 5589.172 kb on + strand, within BWI76_RS26940 at 5589.176 kb on + strand, within BWI76_RS26940 at 5589.186 kb on + strand, within BWI76_RS26940 at 5589.194 kb on - strand, within BWI76_RS26940 at 5589.194 kb on - strand, within BWI76_RS26940 at 5589.236 kb on - strand, within BWI76_RS26940 at 5589.410 kb on - strand, within BWI76_RS26940 at 5589.442 kb on + strand, within BWI76_RS26940 at 5589.450 kb on - strand, within BWI76_RS26940 at 5589.611 kb on + strand at 5589.687 kb on - strand at 5589.757 kb on + strand at 5589.821 kb on - strand, within BWI76_RS26945 at 5589.978 kb on - strand, within BWI76_RS26945 at 5590.209 kb on - strand, within BWI76_RS26945 at 5590.250 kb on + strand, within BWI76_RS26945 at 5590.263 kb on + strand, within BWI76_RS26945 at 5590.403 kb on - strand at 5590.562 kb on - strand, within BWI76_RS26950 at 5590.577 kb on + strand, within BWI76_RS26950 at 5590.588 kb on + strand, within BWI76_RS26950 at 5590.627 kb on + strand, within BWI76_RS26950 at 5590.676 kb on - strand, within BWI76_RS26950 at 5590.876 kb on - strand, within BWI76_RS26950 at 5591.035 kb on + strand, within BWI76_RS26950 at 5591.043 kb on - strand, within BWI76_RS26950 at 5591.346 kb on + strand at 5591.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 5,588,737 + BWI76_RS26940 0.17 -0.6 5,588,845 + BWI76_RS26940 0.28 -1.5 5,588,882 + BWI76_RS26940 0.31 +0.0 5,588,897 - BWI76_RS26940 0.33 +2.2 5,588,925 - BWI76_RS26940 0.36 +0.6 5,589,053 + BWI76_RS26940 0.48 +1.2 5,589,152 - BWI76_RS26940 0.58 -0.6 5,589,172 + BWI76_RS26940 0.60 +1.0 5,589,176 + BWI76_RS26940 0.60 +0.3 5,589,186 + BWI76_RS26940 0.61 +0.3 5,589,194 - BWI76_RS26940 0.62 +0.3 5,589,194 - BWI76_RS26940 0.62 -0.4 5,589,236 - BWI76_RS26940 0.66 -0.1 5,589,410 - BWI76_RS26940 0.83 -0.2 5,589,442 + BWI76_RS26940 0.87 -0.4 5,589,450 - BWI76_RS26940 0.87 -0.1 5,589,611 + +0.9 5,589,687 - +0.5 5,589,757 + -2.4 5,589,821 - BWI76_RS26945 0.18 -2.8 5,589,978 - BWI76_RS26945 0.39 -1.1 5,590,209 - BWI76_RS26945 0.70 -1.2 5,590,250 + BWI76_RS26945 0.75 -0.3 5,590,263 + BWI76_RS26945 0.77 -0.7 5,590,403 - -0.3 5,590,562 - BWI76_RS26950 0.13 +0.2 5,590,577 + BWI76_RS26950 0.15 -0.5 5,590,588 + BWI76_RS26950 0.16 -2.4 5,590,627 + BWI76_RS26950 0.20 -0.2 5,590,676 - BWI76_RS26950 0.25 -0.1 5,590,876 - BWI76_RS26950 0.46 -0.3 5,591,035 + BWI76_RS26950 0.63 +0.4 5,591,043 - BWI76_RS26950 0.64 -0.4 5,591,346 + -0.1 5,591,386 - +0.0
Or see this region's nucleotide sequence