Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24335

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24325 and BWI76_RS24330 are separated by 152 nucleotidesBWI76_RS24330 and BWI76_RS24335 are separated by 151 nucleotidesBWI76_RS24335 and BWI76_RS24340 overlap by 4 nucleotides BWI76_RS24325: BWI76_RS24325 - DNA topoisomerase IV subunit A, at 5,069,377 to 5,071,635 _RS24325 BWI76_RS24330: BWI76_RS24330 - TIGR00156 family protein, at 5,071,788 to 5,072,195 _RS24330 BWI76_RS24335: BWI76_RS24335 - two-component system response regulator QseB, at 5,072,347 to 5,073,006 _RS24335 BWI76_RS24340: BWI76_RS24340 - two-component sensor histidine kinase, at 5,073,003 to 5,074,352 _RS24340 Position (kb) 5072 5073 5074Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5071.723 kb on + strandat 5071.731 kb on - strandat 5071.731 kb on - strandat 5071.778 kb on + strandat 5071.875 kb on - strand, within BWI76_RS24330at 5071.888 kb on - strand, within BWI76_RS24330at 5071.918 kb on - strand, within BWI76_RS24330at 5072.137 kb on - strand, within BWI76_RS24330at 5072.214 kb on - strandat 5072.227 kb on + strandat 5072.227 kb on + strandat 5072.227 kb on + strandat 5072.235 kb on - strandat 5072.235 kb on - strandat 5072.235 kb on - strandat 5072.235 kb on - strandat 5072.440 kb on - strand, within BWI76_RS24335at 5072.466 kb on + strand, within BWI76_RS24335at 5072.474 kb on - strand, within BWI76_RS24335at 5072.474 kb on - strand, within BWI76_RS24335at 5072.725 kb on - strand, within BWI76_RS24335at 5072.765 kb on + strand, within BWI76_RS24335at 5072.907 kb on - strand, within BWI76_RS24335at 5072.927 kb on + strand, within BWI76_RS24335at 5072.927 kb on + strand, within BWI76_RS24335at 5072.979 kb on - strandat 5072.989 kb on + strandat 5072.992 kb on - strandat 5072.992 kb on - strandat 5073.112 kb on + strandat 5073.112 kb on - strandat 5073.263 kb on - strand, within BWI76_RS24340at 5073.492 kb on - strand, within BWI76_RS24340at 5073.499 kb on - strand, within BWI76_RS24340at 5073.667 kb on + strand, within BWI76_RS24340at 5073.744 kb on - strand, within BWI76_RS24340at 5073.977 kb on + strand, within BWI76_RS24340at 5073.997 kb on + strand, within BWI76_RS24340at 5074.005 kb on - strand, within BWI76_RS24340

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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5,071,723 + -0.2
5,071,731 - -0.1
5,071,731 - +2.1
5,071,778 + -0.2
5,071,875 - BWI76_RS24330 0.21 -0.1
5,071,888 - BWI76_RS24330 0.25 -1.1
5,071,918 - BWI76_RS24330 0.32 -1.8
5,072,137 - BWI76_RS24330 0.86 +0.1
5,072,214 - +0.8
5,072,227 + +0.1
5,072,227 + -1.9
5,072,227 + -0.9
5,072,235 - +0.7
5,072,235 - +1.4
5,072,235 - -0.0
5,072,235 - +0.2
5,072,440 - BWI76_RS24335 0.14 -1.7
5,072,466 + BWI76_RS24335 0.18 +0.2
5,072,474 - BWI76_RS24335 0.19 -0.3
5,072,474 - BWI76_RS24335 0.19 -1.7
5,072,725 - BWI76_RS24335 0.57 -0.8
5,072,765 + BWI76_RS24335 0.63 -0.5
5,072,907 - BWI76_RS24335 0.85 -0.9
5,072,927 + BWI76_RS24335 0.88 -3.0
5,072,927 + BWI76_RS24335 0.88 -1.4
5,072,979 - +0.6
5,072,989 + -0.2
5,072,992 - -1.2
5,072,992 - -0.1
5,073,112 + +0.5
5,073,112 - +0.5
5,073,263 - BWI76_RS24340 0.19 +0.3
5,073,492 - BWI76_RS24340 0.36 +1.4
5,073,499 - BWI76_RS24340 0.37 +1.2
5,073,667 + BWI76_RS24340 0.49 +0.4
5,073,744 - BWI76_RS24340 0.55 -0.4
5,073,977 + BWI76_RS24340 0.72 -0.9
5,073,997 + BWI76_RS24340 0.74 -0.2
5,074,005 - BWI76_RS24340 0.74 +0.5

Or see this region's nucleotide sequence