Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18825 and BWI76_RS18830 are separated by 10 nucleotides BWI76_RS18830 and BWI76_RS18835 are separated by 322 nucleotides BWI76_RS18835 and BWI76_RS18840 are separated by 10 nucleotides
BWI76_RS18825: BWI76_RS18825 - protein NifT, at 3,905,395 to 3,905,613
_RS18825
BWI76_RS18830: BWI76_RS18830 - protein NifY, at 3,905,624 to 3,906,286
_RS18830
BWI76_RS18835: BWI76_RS18835 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 3,906,609 to 3,907,982
_RS18835
BWI76_RS18840: BWI76_RS18840 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 3,907,993 to 3,909,378
_RS18840
Position (kb)
3906
3907
3908 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3905.675 kb on + strand at 3905.848 kb on - strand, within BWI76_RS18830 at 3905.885 kb on + strand, within BWI76_RS18830 at 3906.358 kb on + strand at 3906.405 kb on + strand at 3906.470 kb on - strand at 3906.540 kb on + strand at 3906.749 kb on + strand, within BWI76_RS18835 at 3906.881 kb on + strand, within BWI76_RS18835 at 3906.922 kb on - strand, within BWI76_RS18835 at 3907.024 kb on - strand, within BWI76_RS18835 at 3907.049 kb on + strand, within BWI76_RS18835 at 3907.394 kb on - strand, within BWI76_RS18835 at 3907.405 kb on - strand, within BWI76_RS18835 at 3907.984 kb on - strand at 3908.111 kb on - strand at 3908.286 kb on + strand, within BWI76_RS18840 at 3908.294 kb on - strand, within BWI76_RS18840 at 3908.372 kb on - strand, within BWI76_RS18840 at 3908.437 kb on + strand, within BWI76_RS18840 at 3908.437 kb on + strand, within BWI76_RS18840 at 3908.437 kb on + strand, within BWI76_RS18840 at 3908.445 kb on - strand, within BWI76_RS18840 at 3908.445 kb on - strand, within BWI76_RS18840 at 3908.445 kb on - strand, within BWI76_RS18840 at 3908.445 kb on - strand, within BWI76_RS18840 at 3908.445 kb on - strand, within BWI76_RS18840 at 3908.660 kb on - strand, within BWI76_RS18840 at 3908.681 kb on - strand, within BWI76_RS18840 at 3908.698 kb on + strand, within BWI76_RS18840 at 3908.706 kb on - strand, within BWI76_RS18840 at 3908.716 kb on - strand, within BWI76_RS18840 at 3908.798 kb on + strand, within BWI76_RS18840 at 3908.909 kb on + strand, within BWI76_RS18840 at 3908.917 kb on - strand, within BWI76_RS18840 at 3908.981 kb on - strand, within BWI76_RS18840
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 3,905,675 + -1.2 3,905,848 - BWI76_RS18830 0.34 -0.0 3,905,885 + BWI76_RS18830 0.39 -0.4 3,906,358 + -0.4 3,906,405 + -0.1 3,906,470 - -1.5 3,906,540 + +2.0 3,906,749 + BWI76_RS18835 0.10 -0.8 3,906,881 + BWI76_RS18835 0.20 -1.2 3,906,922 - BWI76_RS18835 0.23 -0.2 3,907,024 - BWI76_RS18835 0.30 -1.3 3,907,049 + BWI76_RS18835 0.32 -0.9 3,907,394 - BWI76_RS18835 0.57 +0.8 3,907,405 - BWI76_RS18835 0.58 +0.0 3,907,984 - +0.9 3,908,111 - -0.3 3,908,286 + BWI76_RS18840 0.21 -0.3 3,908,294 - BWI76_RS18840 0.22 -0.4 3,908,372 - BWI76_RS18840 0.27 -2.6 3,908,437 + BWI76_RS18840 0.32 -0.7 3,908,437 + BWI76_RS18840 0.32 +0.6 3,908,437 + BWI76_RS18840 0.32 +0.5 3,908,445 - BWI76_RS18840 0.33 +1.3 3,908,445 - BWI76_RS18840 0.33 -0.2 3,908,445 - BWI76_RS18840 0.33 -0.1 3,908,445 - BWI76_RS18840 0.33 +0.1 3,908,445 - BWI76_RS18840 0.33 -0.7 3,908,660 - BWI76_RS18840 0.48 -0.3 3,908,681 - BWI76_RS18840 0.50 +1.0 3,908,698 + BWI76_RS18840 0.51 +0.4 3,908,706 - BWI76_RS18840 0.51 +0.3 3,908,716 - BWI76_RS18840 0.52 +1.5 3,908,798 + BWI76_RS18840 0.58 -0.3 3,908,909 + BWI76_RS18840 0.66 -1.1 3,908,917 - BWI76_RS18840 0.67 +0.1 3,908,981 - BWI76_RS18840 0.71 +0.4
Or see this region's nucleotide sequence