Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18565 and BWI76_RS18570 are separated by 0 nucleotides BWI76_RS18570 and BWI76_RS18575 are separated by 193 nucleotides BWI76_RS18575 and BWI76_RS18580 are separated by 4 nucleotides BWI76_RS18580 and BWI76_RS18585 are separated by 383 nucleotides
BWI76_RS18565: BWI76_RS18565 - pemk protein, at 3,852,710 to 3,853,043
_RS18565
BWI76_RS18570: BWI76_RS18570 - hypothetical protein, at 3,853,044 to 3,853,247
_RS18570
BWI76_RS18575: BWI76_RS18575 - transcriptional regulator, at 3,853,441 to 3,853,743
_RS18575
BWI76_RS18580: BWI76_RS18580 - hypothetical protein, at 3,853,748 to 3,854,101
_RS18580
BWI76_RS18585: BWI76_RS18585 - two-component sensor histidine kinase, at 3,854,485 to 3,855,903
_RS18585
Position (kb)
3853
3854
3855 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3852.870 kb on + strand, within BWI76_RS18565 at 3852.971 kb on - strand, within BWI76_RS18565 at 3853.049 kb on - strand at 3853.231 kb on - strand at 3853.249 kb on + strand at 3853.262 kb on - strand at 3853.346 kb on + strand at 3853.379 kb on + strand at 3853.414 kb on + strand at 3853.515 kb on - strand, within BWI76_RS18575 at 3853.655 kb on - strand, within BWI76_RS18575 at 3853.776 kb on - strand at 3853.805 kb on + strand, within BWI76_RS18580 at 3854.056 kb on + strand, within BWI76_RS18580 at 3854.308 kb on - strand at 3854.358 kb on + strand at 3854.490 kb on - strand at 3854.619 kb on + strand at 3854.831 kb on + strand, within BWI76_RS18585 at 3854.831 kb on + strand, within BWI76_RS18585 at 3854.839 kb on - strand, within BWI76_RS18585 at 3854.839 kb on - strand, within BWI76_RS18585 at 3854.850 kb on - strand, within BWI76_RS18585 at 3854.925 kb on - strand, within BWI76_RS18585 at 3854.934 kb on + strand, within BWI76_RS18585 at 3854.952 kb on - strand, within BWI76_RS18585 at 3855.054 kb on + strand, within BWI76_RS18585 at 3855.083 kb on + strand, within BWI76_RS18585
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 3,852,870 + BWI76_RS18565 0.48 +0.7 3,852,971 - BWI76_RS18565 0.78 -0.4 3,853,049 - +0.0 3,853,231 - -0.8 3,853,249 + +2.7 3,853,262 - +0.4 3,853,346 + +0.1 3,853,379 + +0.3 3,853,414 + -2.2 3,853,515 - BWI76_RS18575 0.24 -0.7 3,853,655 - BWI76_RS18575 0.71 -0.4 3,853,776 - -2.0 3,853,805 + BWI76_RS18580 0.16 -0.4 3,854,056 + BWI76_RS18580 0.87 -3.0 3,854,308 - -0.1 3,854,358 + -0.8 3,854,490 - +0.3 3,854,619 + +1.1 3,854,831 + BWI76_RS18585 0.24 +0.6 3,854,831 + BWI76_RS18585 0.24 +0.9 3,854,839 - BWI76_RS18585 0.25 -0.3 3,854,839 - BWI76_RS18585 0.25 -1.7 3,854,850 - BWI76_RS18585 0.26 -1.1 3,854,925 - BWI76_RS18585 0.31 -1.0 3,854,934 + BWI76_RS18585 0.32 +2.5 3,854,952 - BWI76_RS18585 0.33 -0.0 3,855,054 + BWI76_RS18585 0.40 +0.0 3,855,083 + BWI76_RS18585 0.42 -0.3
Or see this region's nucleotide sequence