Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16580

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16575 and BWI76_RS16580 overlap by 1 nucleotidesBWI76_RS16580 and BWI76_RS16585 are separated by 8 nucleotides BWI76_RS16575: BWI76_RS16575 - cytochrome ubiquinol oxidase subunit I, at 3,432,635 to 3,434,038 _RS16575 BWI76_RS16580: BWI76_RS16580 - ubiquinol oxidase subunit II, at 3,434,038 to 3,435,048 _RS16580 BWI76_RS16585: BWI76_RS16585 - trehalose synthase, at 3,435,057 to 3,436,682 _RS16585 Position (kb) 3434 3435 3436Strain fitness (log2 ratio) -3 -2 -1 0 1at 3433.136 kb on + strand, within BWI76_RS16575at 3433.334 kb on - strandat 3433.826 kb on - strand, within BWI76_RS16575at 3433.837 kb on + strand, within BWI76_RS16575at 3433.885 kb on + strand, within BWI76_RS16575at 3433.893 kb on - strand, within BWI76_RS16575at 3434.224 kb on - strand, within BWI76_RS16580at 3434.417 kb on + strand, within BWI76_RS16580at 3434.425 kb on - strand, within BWI76_RS16580at 3434.464 kb on - strand, within BWI76_RS16580at 3434.785 kb on - strand, within BWI76_RS16580at 3434.796 kb on + strand, within BWI76_RS16580at 3434.990 kb on - strandat 3435.161 kb on + strandat 3435.207 kb on + strandat 3435.265 kb on - strand, within BWI76_RS16585at 3435.490 kb on + strand, within BWI76_RS16585at 3435.671 kb on + strand, within BWI76_RS16585at 3435.757 kb on - strand, within BWI76_RS16585at 3435.930 kb on + strand, within BWI76_RS16585at 3436.004 kb on - strand, within BWI76_RS16585

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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3,433,136 + BWI76_RS16575 0.36 +0.3
3,433,334 - -1.2
3,433,826 - BWI76_RS16575 0.85 +0.4
3,433,837 + BWI76_RS16575 0.86 +0.9
3,433,885 + BWI76_RS16575 0.89 +0.9
3,433,893 - BWI76_RS16575 0.90 -1.0
3,434,224 - BWI76_RS16580 0.18 +1.6
3,434,417 + BWI76_RS16580 0.37 -0.5
3,434,425 - BWI76_RS16580 0.38 -1.7
3,434,464 - BWI76_RS16580 0.42 +1.0
3,434,785 - BWI76_RS16580 0.74 -0.1
3,434,796 + BWI76_RS16580 0.75 +0.8
3,434,990 - -0.2
3,435,161 + -3.2
3,435,207 + +0.8
3,435,265 - BWI76_RS16585 0.13 -0.2
3,435,490 + BWI76_RS16585 0.27 +0.4
3,435,671 + BWI76_RS16585 0.38 +0.0
3,435,757 - BWI76_RS16585 0.43 +1.2
3,435,930 + BWI76_RS16585 0.54 +0.3
3,436,004 - BWI76_RS16585 0.58 -1.7

Or see this region's nucleotide sequence