Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16455

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16450 and BWI76_RS16455 overlap by 8 nucleotidesBWI76_RS16455 and BWI76_RS16460 are separated by 59 nucleotides BWI76_RS16450: BWI76_RS16450 - fusaric acid resistance protein, at 3,411,518 to 3,413,542 _RS16450 BWI76_RS16455: BWI76_RS16455 - superoxide dismutase, at 3,413,535 to 3,414,056 _RS16455 BWI76_RS16460: BWI76_RS16460 - oxidoreductase, at 3,414,116 to 3,415,012 _RS16460 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -1 0 1 2at 3412.638 kb on - strand, within BWI76_RS16450at 3412.884 kb on + strand, within BWI76_RS16450at 3413.343 kb on - strandat 3413.361 kb on + strandat 3413.382 kb on + strandat 3413.390 kb on - strandat 3413.729 kb on + strand, within BWI76_RS16455at 3413.749 kb on + strand, within BWI76_RS16455at 3414.262 kb on + strand, within BWI76_RS16460at 3414.272 kb on - strand, within BWI76_RS16460at 3414.814 kb on - strand, within BWI76_RS16460at 3414.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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3,412,638 - BWI76_RS16450 0.55 +1.0
3,412,884 + BWI76_RS16450 0.67 -1.0
3,413,343 - +0.5
3,413,361 + +1.0
3,413,382 + -0.1
3,413,390 - -0.3
3,413,729 + BWI76_RS16455 0.37 -0.4
3,413,749 + BWI76_RS16455 0.41 +1.9
3,414,262 + BWI76_RS16460 0.16 -0.0
3,414,272 - BWI76_RS16460 0.17 +0.1
3,414,814 - BWI76_RS16460 0.78 +1.1
3,414,983 + +1.2

Or see this region's nucleotide sequence