Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13400 and BWI76_RS13405 are separated by 365 nucleotides BWI76_RS13405 and BWI76_RS13410 are separated by 19 nucleotides
BWI76_RS13400: BWI76_RS13400 - GntR family transcriptional regulator, at 2,794,325 to 2,795,737
_RS13400
BWI76_RS13405: BWI76_RS13405 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,796,103 to 2,797,248
_RS13405
BWI76_RS13410: BWI76_RS13410 - polyamine ABC transporter ATP-binding protein, at 2,797,268 to 2,798,278
_RS13410
Position (kb)
2796
2797
2798 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2795.389 kb on + strand, within BWI76_RS13400 at 2795.401 kb on + strand, within BWI76_RS13400 at 2795.601 kb on - strand at 2795.663 kb on + strand at 2795.736 kb on + strand at 2795.751 kb on + strand at 2795.756 kb on + strand at 2795.772 kb on + strand at 2795.783 kb on + strand at 2796.023 kb on - strand at 2796.092 kb on + strand at 2796.141 kb on + strand at 2796.362 kb on + strand, within BWI76_RS13405 at 2796.370 kb on - strand, within BWI76_RS13405 at 2796.510 kb on + strand, within BWI76_RS13405 at 2796.946 kb on + strand, within BWI76_RS13405 at 2796.985 kb on + strand, within BWI76_RS13405 at 2797.092 kb on + strand, within BWI76_RS13405 at 2797.769 kb on - strand, within BWI76_RS13410 at 2797.780 kb on + strand, within BWI76_RS13410 at 2797.839 kb on + strand, within BWI76_RS13410
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 2,795,389 + BWI76_RS13400 0.75 -2.1 2,795,401 + BWI76_RS13400 0.76 -1.3 2,795,601 - +0.8 2,795,663 + -1.0 2,795,736 + -0.6 2,795,751 + -0.1 2,795,756 + -0.3 2,795,772 + -0.2 2,795,783 + +0.5 2,796,023 - +0.6 2,796,092 + +2.0 2,796,141 + -1.5 2,796,362 + BWI76_RS13405 0.23 +0.2 2,796,370 - BWI76_RS13405 0.23 -0.7 2,796,510 + BWI76_RS13405 0.36 +0.7 2,796,946 + BWI76_RS13405 0.74 +0.6 2,796,985 + BWI76_RS13405 0.77 +1.0 2,797,092 + BWI76_RS13405 0.86 +0.9 2,797,769 - BWI76_RS13410 0.50 +0.5 2,797,780 + BWI76_RS13410 0.51 +0.1 2,797,839 + BWI76_RS13410 0.56 -0.3
Or see this region's nucleotide sequence