Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09795

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09790 and BWI76_RS09795 are separated by 45 nucleotidesBWI76_RS09795 and BWI76_RS09800 overlap by 4 nucleotides BWI76_RS09790: BWI76_RS09790 - ComEC family protein, at 2,052,834 to 2,055,089 _RS09790 BWI76_RS09795: BWI76_RS09795 - lipid ABC transporter permease/ATP-binding protein, at 2,055,135 to 2,056,883 _RS09795 BWI76_RS09800: BWI76_RS09800 - tetraacyldisaccharide 4'-kinase, at 2,056,880 to 2,057,860 _RS09800 Position (kb) 2055 2056 2057Strain fitness (log2 ratio) -1 0 1 2 3at 2054.203 kb on + strand, within BWI76_RS09790at 2054.360 kb on - strand, within BWI76_RS09790at 2054.500 kb on + strand, within BWI76_RS09790at 2054.560 kb on - strand, within BWI76_RS09790at 2054.668 kb on - strand, within BWI76_RS09790at 2054.733 kb on - strand, within BWI76_RS09790at 2054.852 kb on - strand, within BWI76_RS09790at 2054.858 kb on - strand, within BWI76_RS09790at 2054.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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2,054,203 + BWI76_RS09790 0.61 +0.6
2,054,360 - BWI76_RS09790 0.68 +0.6
2,054,500 + BWI76_RS09790 0.74 +0.5
2,054,560 - BWI76_RS09790 0.77 +0.8
2,054,668 - BWI76_RS09790 0.81 -0.6
2,054,733 - BWI76_RS09790 0.84 +0.1
2,054,852 - BWI76_RS09790 0.89 +2.9
2,054,858 - BWI76_RS09790 0.90 +0.3
2,054,914 - +0.6

Or see this region's nucleotide sequence