Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08600

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08590 and BWI76_RS08595 are separated by 118 nucleotidesBWI76_RS08595 and BWI76_RS08600 are separated by 315 nucleotidesBWI76_RS08600 and BWI76_RS08605 are separated by 68 nucleotides BWI76_RS08590: BWI76_RS08590 - zinc transporter ZitB, at 1,812,132 to 1,813,076 _RS08590 BWI76_RS08595: BWI76_RS08595 - hypothetical protein, at 1,813,195 to 1,813,566 _RS08595 BWI76_RS08600: BWI76_RS08600 - 3-deoxy-7-phosphoheptulonate synthase, at 1,813,882 to 1,814,934 _RS08600 BWI76_RS08605: BWI76_RS08605 - phosphoglyceromutase, at 1,815,003 to 1,815,755 _RS08605 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -1 0 1 2at 1812.988 kb on - strandat 1813.082 kb on + strandat 1813.168 kb on - strandat 1813.170 kb on + strandat 1813.178 kb on - strandat 1813.208 kb on - strandat 1813.326 kb on - strand, within BWI76_RS08595at 1813.337 kb on + strand, within BWI76_RS08595at 1813.395 kb on - strand, within BWI76_RS08595at 1813.422 kb on + strand, within BWI76_RS08595at 1813.454 kb on + strand, within BWI76_RS08595at 1813.518 kb on + strand, within BWI76_RS08595at 1813.524 kb on + strand, within BWI76_RS08595at 1813.634 kb on - strandat 1813.641 kb on + strandat 1813.641 kb on + strandat 1813.721 kb on - strandat 1814.066 kb on - strand, within BWI76_RS08600at 1814.104 kb on + strand, within BWI76_RS08600at 1814.266 kb on - strand, within BWI76_RS08600at 1814.609 kb on - strand, within BWI76_RS08600at 1814.653 kb on - strand, within BWI76_RS08600at 1815.018 kb on - strandat 1815.048 kb on + strandat 1815.204 kb on - strand, within BWI76_RS08605at 1815.288 kb on - strand, within BWI76_RS08605at 1815.423 kb on - strand, within BWI76_RS08605at 1815.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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1,812,988 - +1.5
1,813,082 + +2.4
1,813,168 - -0.4
1,813,170 + +0.7
1,813,178 - +0.5
1,813,208 - -1.0
1,813,326 - BWI76_RS08595 0.35 +0.2
1,813,337 + BWI76_RS08595 0.38 -0.6
1,813,395 - BWI76_RS08595 0.54 -0.2
1,813,422 + BWI76_RS08595 0.61 +0.3
1,813,454 + BWI76_RS08595 0.70 -0.0
1,813,518 + BWI76_RS08595 0.87 +1.0
1,813,524 + BWI76_RS08595 0.88 -1.0
1,813,634 - -0.8
1,813,641 + -0.2
1,813,641 + +0.4
1,813,721 - -0.2
1,814,066 - BWI76_RS08600 0.17 +2.7
1,814,104 + BWI76_RS08600 0.21 -0.2
1,814,266 - BWI76_RS08600 0.36 -0.0
1,814,609 - BWI76_RS08600 0.69 -1.2
1,814,653 - BWI76_RS08600 0.73 +0.1
1,815,018 - -0.5
1,815,048 + +0.1
1,815,204 - BWI76_RS08605 0.27 +0.6
1,815,288 - BWI76_RS08605 0.38 -0.0
1,815,423 - BWI76_RS08605 0.56 -0.7
1,815,890 + +0.1

Or see this region's nucleotide sequence