Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07875 and BWI76_RS07880 are separated by 38 nucleotides BWI76_RS07880 and BWI76_RS07885 are separated by 11 nucleotides BWI76_RS07885 and BWI76_RS07890 overlap by 1 nucleotides BWI76_RS07890 and BWI76_RS07895 overlap by 4 nucleotides
BWI76_RS07875: BWI76_RS07875 - dihydrofolate reductase, at 1,671,520 to 1,672,548
_RS07875
BWI76_RS07880: BWI76_RS07880 - PfkB domain-containing protein, at 1,672,587 to 1,673,531
_RS07880
BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544
_RS07885
BWI76_RS07890: BWI76_RS07890 - putative ABC-type sugar transport system permease component, at 1,674,544 to 1,675,530
_RS07890
BWI76_RS07895: BWI76_RS07895 - sugar ABC transporter ATPase, at 1,675,527 to 1,677,080
_RS07895
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-1
0
1 at 1672.789 kb on + strand, within BWI76_RS07880 at 1672.994 kb on + strand, within BWI76_RS07880 at 1673.002 kb on - strand, within BWI76_RS07880 at 1673.186 kb on + strand, within BWI76_RS07880 at 1673.186 kb on + strand, within BWI76_RS07880 at 1673.278 kb on - strand, within BWI76_RS07880 at 1673.524 kb on - strand at 1673.680 kb on + strand, within BWI76_RS07885 at 1673.754 kb on + strand, within BWI76_RS07885 at 1673.928 kb on - strand, within BWI76_RS07885 at 1674.113 kb on + strand, within BWI76_RS07885 at 1674.667 kb on + strand, within BWI76_RS07890 at 1674.667 kb on + strand, within BWI76_RS07890 at 1674.667 kb on + strand, within BWI76_RS07890 at 1674.675 kb on - strand, within BWI76_RS07890 at 1674.675 kb on - strand, within BWI76_RS07890 at 1674.897 kb on - strand at 1675.166 kb on - strand, within BWI76_RS07890 at 1675.234 kb on - strand, within BWI76_RS07890 at 1675.280 kb on - strand, within BWI76_RS07890 at 1675.309 kb on + strand, within BWI76_RS07890 at 1675.347 kb on + strand, within BWI76_RS07890 at 1675.355 kb on - strand, within BWI76_RS07890 at 1675.431 kb on + strand, within BWI76_RS07890
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 1,672,789 + BWI76_RS07880 0.21 -1.2 1,672,994 + BWI76_RS07880 0.43 -0.3 1,673,002 - BWI76_RS07880 0.44 -0.5 1,673,186 + BWI76_RS07880 0.63 -0.1 1,673,186 + BWI76_RS07880 0.63 -0.3 1,673,278 - BWI76_RS07880 0.73 -1.5 1,673,524 - -0.8 1,673,680 + BWI76_RS07885 0.14 -0.9 1,673,754 + BWI76_RS07885 0.21 -0.9 1,673,928 - BWI76_RS07885 0.38 -0.2 1,674,113 + BWI76_RS07885 0.57 +0.3 1,674,667 + BWI76_RS07890 0.12 +0.2 1,674,667 + BWI76_RS07890 0.12 +0.8 1,674,667 + BWI76_RS07890 0.12 -0.4 1,674,675 - BWI76_RS07890 0.13 +0.7 1,674,675 - BWI76_RS07890 0.13 -0.7 1,674,897 - +1.6 1,675,166 - BWI76_RS07890 0.63 +0.5 1,675,234 - BWI76_RS07890 0.70 +1.0 1,675,280 - BWI76_RS07890 0.75 +0.4 1,675,309 + BWI76_RS07890 0.78 +0.4 1,675,347 + BWI76_RS07890 0.81 +0.2 1,675,355 - BWI76_RS07890 0.82 -0.3 1,675,431 + BWI76_RS07890 0.90 +0.0
Or see this region's nucleotide sequence