Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04360 and BWI76_RS04365 are separated by 29 nucleotides BWI76_RS04365 and BWI76_RS04370 are separated by 279 nucleotides
BWI76_RS04360: BWI76_RS04360 - ribonucleoside hydrolase RihC, at 897,886 to 898,800
_RS04360
BWI76_RS04365: BWI76_RS04365 - LysR family transcriptional regulator, at 898,830 to 899,768
_RS04365
BWI76_RS04370: BWI76_RS04370 - FldA family protein, at 900,048 to 901,103
_RS04370
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 897.853 kb on + strand at 897.853 kb on + strand at 898.063 kb on - strand, within BWI76_RS04360 at 898.115 kb on - strand, within BWI76_RS04360 at 898.350 kb on + strand, within BWI76_RS04360 at 898.453 kb on - strand at 898.558 kb on + strand, within BWI76_RS04360 at 898.628 kb on + strand, within BWI76_RS04360 at 898.834 kb on - strand at 898.953 kb on + strand, within BWI76_RS04365 at 899.063 kb on - strand, within BWI76_RS04365 at 899.113 kb on - strand, within BWI76_RS04365 at 899.193 kb on + strand, within BWI76_RS04365 at 899.199 kb on + strand, within BWI76_RS04365 at 899.210 kb on - strand, within BWI76_RS04365 at 899.267 kb on - strand, within BWI76_RS04365 at 899.296 kb on - strand, within BWI76_RS04365 at 899.346 kb on + strand, within BWI76_RS04365 at 899.355 kb on - strand, within BWI76_RS04365 at 899.369 kb on - strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.372 kb on + strand, within BWI76_RS04365 at 899.374 kb on + strand, within BWI76_RS04365 at 899.374 kb on + strand, within BWI76_RS04365 at 899.374 kb on + strand, within BWI76_RS04365 at 899.378 kb on - strand, within BWI76_RS04365 at 899.378 kb on - strand, within BWI76_RS04365 at 899.378 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.380 kb on - strand, within BWI76_RS04365 at 899.382 kb on - strand, within BWI76_RS04365 at 899.475 kb on + strand, within BWI76_RS04365 at 899.478 kb on - strand, within BWI76_RS04365 at 899.480 kb on + strand, within BWI76_RS04365 at 899.480 kb on + strand, within BWI76_RS04365 at 899.512 kb on + strand, within BWI76_RS04365 at 899.519 kb on + strand at 899.534 kb on + strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.562 kb on - strand, within BWI76_RS04365 at 899.596 kb on - strand at 899.622 kb on - strand, within BWI76_RS04365 at 899.624 kb on + strand, within BWI76_RS04365 at 899.664 kb on + strand, within BWI76_RS04365 at 899.674 kb on + strand, within BWI76_RS04365 at 899.678 kb on + strand at 899.678 kb on + strand at 899.678 kb on + strand at 899.678 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.686 kb on - strand at 899.686 kb on - strand at 899.688 kb on + strand at 899.688 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.691 kb on - strand at 899.701 kb on + strand at 899.723 kb on + strand at 899.723 kb on - strand at 899.723 kb on - strand at 899.731 kb on - strand at 899.731 kb on - strand at 899.776 kb on + strand at 899.781 kb on - strand at 899.784 kb on - strand at 899.784 kb on - strand at 899.786 kb on - strand at 899.792 kb on + strand at 899.805 kb on - strand at 899.805 kb on - strand at 899.901 kb on - strand at 899.931 kb on - strand at 899.999 kb on + strand at 900.004 kb on + strand at 900.004 kb on + strand at 900.004 kb on + strand at 900.004 kb on + strand at 900.004 kb on + strand at 900.004 kb on + strand at 900.004 kb on + strand at 900.012 kb on - strand at 900.012 kb on - strand at 900.012 kb on - strand at 900.045 kb on + strand at 900.062 kb on - strand at 900.066 kb on + strand at 900.074 kb on - strand at 900.164 kb on - strand, within BWI76_RS04370 at 900.173 kb on - strand, within BWI76_RS04370 at 900.194 kb on + strand, within BWI76_RS04370 at 900.198 kb on + strand, within BWI76_RS04370 at 900.198 kb on + strand, within BWI76_RS04370 at 900.206 kb on - strand, within BWI76_RS04370 at 900.210 kb on + strand, within BWI76_RS04370 at 900.218 kb on - strand, within BWI76_RS04370 at 900.225 kb on - strand, within BWI76_RS04370 at 900.225 kb on - strand, within BWI76_RS04370 at 900.246 kb on - strand, within BWI76_RS04370 at 900.279 kb on + strand at 900.305 kb on + strand, within BWI76_RS04370 at 900.315 kb on + strand, within BWI76_RS04370 at 900.323 kb on - strand, within BWI76_RS04370 at 900.328 kb on + strand, within BWI76_RS04370 at 900.330 kb on + strand, within BWI76_RS04370 at 900.330 kb on + strand, within BWI76_RS04370 at 900.352 kb on + strand, within BWI76_RS04370 at 900.365 kb on + strand, within BWI76_RS04370 at 900.370 kb on + strand, within BWI76_RS04370 at 900.447 kb on - strand, within BWI76_RS04370 at 900.447 kb on - strand, within BWI76_RS04370 at 900.461 kb on + strand, within BWI76_RS04370 at 900.474 kb on - strand, within BWI76_RS04370 at 900.489 kb on - strand, within BWI76_RS04370 at 900.501 kb on + strand, within BWI76_RS04370 at 900.509 kb on - strand, within BWI76_RS04370 at 900.551 kb on + strand, within BWI76_RS04370 at 900.564 kb on - strand, within BWI76_RS04370 at 900.578 kb on + strand, within BWI76_RS04370 at 900.604 kb on + strand, within BWI76_RS04370 at 900.604 kb on + strand, within BWI76_RS04370 at 900.604 kb on + strand, within BWI76_RS04370 at 900.612 kb on - strand, within BWI76_RS04370 at 900.612 kb on - strand, within BWI76_RS04370 at 900.619 kb on + strand, within BWI76_RS04370 at 900.619 kb on + strand, within BWI76_RS04370 at 900.622 kb on - strand, within BWI76_RS04370 at 900.624 kb on - strand, within BWI76_RS04370 at 900.627 kb on - strand, within BWI76_RS04370 at 900.635 kb on + strand, within BWI76_RS04370 at 900.643 kb on - strand, within BWI76_RS04370 at 900.645 kb on - strand, within BWI76_RS04370 at 900.645 kb on - strand, within BWI76_RS04370 at 900.649 kb on + strand at 900.657 kb on - strand, within BWI76_RS04370 at 900.665 kb on + strand, within BWI76_RS04370 at 900.699 kb on + strand, within BWI76_RS04370 at 900.704 kb on + strand, within BWI76_RS04370 at 900.735 kb on + strand, within BWI76_RS04370 at 900.735 kb on + strand, within BWI76_RS04370 at 900.743 kb on - strand, within BWI76_RS04370 at 900.755 kb on + strand at 900.755 kb on + strand, within BWI76_RS04370 at 900.756 kb on + strand, within BWI76_RS04370 at 900.762 kb on + strand, within BWI76_RS04370 at 900.764 kb on - strand, within BWI76_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 897,853 + +0.1 897,853 + +0.4 898,063 - BWI76_RS04360 0.19 +0.6 898,115 - BWI76_RS04360 0.25 -0.5 898,350 + BWI76_RS04360 0.51 +2.6 898,453 - +2.0 898,558 + BWI76_RS04360 0.73 -0.3 898,628 + BWI76_RS04360 0.81 +1.5 898,834 - -0.2 898,953 + BWI76_RS04365 0.13 +1.0 899,063 - BWI76_RS04365 0.25 +0.0 899,113 - BWI76_RS04365 0.30 +0.6 899,193 + BWI76_RS04365 0.39 +1.4 899,199 + BWI76_RS04365 0.39 -0.8 899,210 - BWI76_RS04365 0.40 -1.1 899,267 - BWI76_RS04365 0.47 +1.6 899,296 - BWI76_RS04365 0.50 +0.3 899,346 + BWI76_RS04365 0.55 +1.2 899,355 - BWI76_RS04365 0.56 -0.0 899,369 - BWI76_RS04365 0.57 -0.1 899,372 + BWI76_RS04365 0.58 -1.2 899,372 + BWI76_RS04365 0.58 +1.8 899,372 + +0.0 899,372 + BWI76_RS04365 0.58 +0.0 899,372 + BWI76_RS04365 0.58 -1.1 899,372 + BWI76_RS04365 0.58 +2.0 899,374 + BWI76_RS04365 0.58 -0.2 899,374 + BWI76_RS04365 0.58 -2.8 899,374 + BWI76_RS04365 0.58 -2.8 899,378 - BWI76_RS04365 0.58 -2.4 899,378 - BWI76_RS04365 0.58 +0.4 899,378 - BWI76_RS04365 0.58 -1.0 899,380 - BWI76_RS04365 0.59 +0.3 899,380 - BWI76_RS04365 0.59 +0.8 899,380 - BWI76_RS04365 0.59 +0.7 899,380 - BWI76_RS04365 0.59 +0.8 899,380 - BWI76_RS04365 0.59 -3.1 899,380 - BWI76_RS04365 0.59 +0.2 899,382 - BWI76_RS04365 0.59 +0.6 899,475 + BWI76_RS04365 0.69 -1.7 899,478 - BWI76_RS04365 0.69 +0.4 899,480 + BWI76_RS04365 0.69 -2.0 899,480 + BWI76_RS04365 0.69 +0.8 899,512 + BWI76_RS04365 0.73 -0.8 899,519 + +1.3 899,534 + BWI76_RS04365 0.75 -1.2 899,562 - BWI76_RS04365 0.78 +1.2 899,562 - BWI76_RS04365 0.78 -0.3 899,562 - BWI76_RS04365 0.78 +0.0 899,562 - BWI76_RS04365 0.78 -2.5 899,596 - +2.3 899,622 - BWI76_RS04365 0.84 -2.3 899,624 + BWI76_RS04365 0.85 -1.3 899,664 + BWI76_RS04365 0.89 +2.3 899,674 + BWI76_RS04365 0.90 +0.6 899,678 + +0.7 899,678 + +2.4 899,678 + -0.8 899,678 + +0.4 899,683 + +0.5 899,683 + +1.1 899,683 + +1.4 899,683 + -0.8 899,683 + +2.5 899,686 - +0.5 899,686 - -1.0 899,688 + +0.4 899,688 - +0.0 899,691 - +2.7 899,691 - +1.6 899,691 - -0.3 899,691 - -1.6 899,691 - +0.3 899,691 - -1.2 899,691 - +1.0 899,691 - +0.4 899,701 + +1.0 899,723 + +2.0 899,723 - +2.2 899,723 - -0.7 899,731 - +0.1 899,731 - -0.6 899,776 + +0.2 899,781 - +1.6 899,784 - -0.9 899,784 - +0.7 899,786 - +0.6 899,792 + -2.0 899,805 - -0.9 899,805 - -1.0 899,901 - -0.8 899,931 - -0.7 899,999 + -1.7 900,004 + -0.0 900,004 + +0.4 900,004 + +0.9 900,004 + -0.8 900,004 + -2.4 900,004 + -1.6 900,004 + +1.1 900,012 - -2.0 900,012 - -1.2 900,012 - +2.0 900,045 + +0.1 900,062 - +3.2 900,066 + -0.3 900,074 - +0.3 900,164 - BWI76_RS04370 0.11 +0.6 900,173 - BWI76_RS04370 0.12 +0.0 900,194 + BWI76_RS04370 0.14 -0.1 900,198 + BWI76_RS04370 0.14 -1.4 900,198 + BWI76_RS04370 0.14 -1.9 900,206 - BWI76_RS04370 0.15 -2.1 900,210 + BWI76_RS04370 0.15 +1.2 900,218 - BWI76_RS04370 0.16 -1.9 900,225 - BWI76_RS04370 0.17 -0.1 900,225 - BWI76_RS04370 0.17 +1.2 900,246 - BWI76_RS04370 0.19 -1.0 900,279 + +2.3 900,305 + BWI76_RS04370 0.24 +0.4 900,315 + BWI76_RS04370 0.25 +1.4 900,323 - BWI76_RS04370 0.26 +0.1 900,328 + BWI76_RS04370 0.27 +0.1 900,330 + BWI76_RS04370 0.27 -1.0 900,330 + BWI76_RS04370 0.27 +1.0 900,352 + BWI76_RS04370 0.29 -0.9 900,365 + BWI76_RS04370 0.30 -0.2 900,370 + BWI76_RS04370 0.30 -0.8 900,447 - BWI76_RS04370 0.38 +1.3 900,447 - BWI76_RS04370 0.38 +2.6 900,461 + BWI76_RS04370 0.39 -0.3 900,474 - BWI76_RS04370 0.40 +1.6 900,489 - BWI76_RS04370 0.42 -0.8 900,501 + BWI76_RS04370 0.43 -2.4 900,509 - BWI76_RS04370 0.44 +2.0 900,551 + BWI76_RS04370 0.48 +0.3 900,564 - BWI76_RS04370 0.49 -2.3 900,578 + BWI76_RS04370 0.50 +1.2 900,604 + BWI76_RS04370 0.53 -0.6 900,604 + BWI76_RS04370 0.53 -0.8 900,604 + BWI76_RS04370 0.53 -0.9 900,612 - BWI76_RS04370 0.53 +1.4 900,612 - BWI76_RS04370 0.53 +1.6 900,619 + BWI76_RS04370 0.54 -0.7 900,619 + BWI76_RS04370 0.54 +3.7 900,622 - BWI76_RS04370 0.54 +0.2 900,624 - BWI76_RS04370 0.55 -1.4 900,627 - BWI76_RS04370 0.55 +1.7 900,635 + BWI76_RS04370 0.56 +0.6 900,643 - BWI76_RS04370 0.56 +0.4 900,645 - BWI76_RS04370 0.57 -2.4 900,645 - BWI76_RS04370 0.57 -3.3 900,649 + +4.3 900,657 - BWI76_RS04370 0.58 +0.2 900,665 + BWI76_RS04370 0.58 -2.4 900,699 + BWI76_RS04370 0.62 -0.6 900,704 + BWI76_RS04370 0.62 -1.0 900,735 + BWI76_RS04370 0.65 +0.9 900,735 + BWI76_RS04370 0.65 -1.2 900,743 - BWI76_RS04370 0.66 +0.1 900,755 + -0.3 900,755 + BWI76_RS04370 0.67 -1.0 900,756 + BWI76_RS04370 0.67 -0.2 900,762 + BWI76_RS04370 0.68 -3.7 900,764 - BWI76_RS04370 0.68 +0.6
Or see this region's nucleotide sequence