Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04150 and BWI76_RS04155 are separated by 10 nucleotides BWI76_RS04155 and BWI76_RS04160 are separated by 104 nucleotides
BWI76_RS04150: BWI76_RS04150 - lipoate--protein ligase A, at 853,899 to 854,915
_RS04150
BWI76_RS04155: BWI76_RS04155 - membrane protein, at 854,926 to 855,567
_RS04155
BWI76_RS04160: BWI76_RS04160 - phosphoserine phosphatase, at 855,672 to 856,643
_RS04160
Position (kb) 854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 854.125 kb on - strand, within BWI76_RS04150 at 854.125 kb on - strand, within BWI76_RS04150 at 854.264 kb on - strand, within BWI76_RS04150 at 854.274 kb on - strand, within BWI76_RS04150 at 854.379 kb on + strand, within BWI76_RS04150 at 854.386 kb on + strand, within BWI76_RS04150 at 854.387 kb on - strand, within BWI76_RS04150 at 854.505 kb on + strand, within BWI76_RS04150 at 854.513 kb on - strand, within BWI76_RS04150 at 854.670 kb on - strand, within BWI76_RS04150 at 854.972 kb on - strand at 855.070 kb on + strand, within BWI76_RS04155 at 855.251 kb on - strand, within BWI76_RS04155 at 855.251 kb on - strand, within BWI76_RS04155 at 855.486 kb on + strand, within BWI76_RS04155 at 855.504 kb on - strand at 855.512 kb on - strand at 855.522 kb on - strand at 855.691 kb on + strand at 855.726 kb on + strand at 855.797 kb on + strand, within BWI76_RS04160 at 855.866 kb on - strand, within BWI76_RS04160 at 855.919 kb on + strand, within BWI76_RS04160 at 855.927 kb on - strand, within BWI76_RS04160 at 856.200 kb on - strand, within BWI76_RS04160 at 856.310 kb on + strand, within BWI76_RS04160 at 856.331 kb on - strand, within BWI76_RS04160
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 854,125 - BWI76_RS04150 0.22 -1.2 854,125 - BWI76_RS04150 0.22 -0.8 854,264 - BWI76_RS04150 0.36 +0.3 854,274 - BWI76_RS04150 0.37 -0.3 854,379 + BWI76_RS04150 0.47 +1.1 854,386 + BWI76_RS04150 0.48 +0.9 854,387 - BWI76_RS04150 0.48 +0.7 854,505 + BWI76_RS04150 0.60 +0.1 854,513 - BWI76_RS04150 0.60 -0.2 854,670 - BWI76_RS04150 0.76 -0.0 854,972 - -1.2 855,070 + BWI76_RS04155 0.22 -0.4 855,251 - BWI76_RS04155 0.51 -0.6 855,251 - BWI76_RS04155 0.51 -1.8 855,486 + BWI76_RS04155 0.87 -1.2 855,504 - -1.2 855,512 - -1.6 855,522 - +0.0 855,691 + -0.6 855,726 + -3.4 855,797 + BWI76_RS04160 0.13 -1.3 855,866 - BWI76_RS04160 0.20 +0.2 855,919 + BWI76_RS04160 0.25 +0.7 855,927 - BWI76_RS04160 0.26 +0.5 856,200 - BWI76_RS04160 0.54 -1.1 856,310 + BWI76_RS04160 0.66 +0.6 856,331 - BWI76_RS04160 0.68 -1.3
Or see this region's nucleotide sequence