Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00265

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00260 and BWI76_RS00265 are separated by 218 nucleotidesBWI76_RS00265 and BWI76_RS00270 are separated by 182 nucleotidesBWI76_RS00270 and BWI76_RS00275 are separated by 10 nucleotides BWI76_RS00260: BWI76_RS00260 - ATPase RavA, at 52,540 to 54,039 _RS00260 BWI76_RS00265: BWI76_RS00265 - potassium transporter Kup, at 54,258 to 56,126 _RS00265 BWI76_RS00270: BWI76_RS00270 - D-ribose pyranase (EC 5.4.99.62) (from data), at 56,309 to 56,728 _RS00270 BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244 _RS00275 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 53.362 kb on + strand, within BWI76_RS00260at 53.417 kb on - strand, within BWI76_RS00260at 53.417 kb on - strand, within BWI76_RS00260at 53.441 kb on + strand, within BWI76_RS00260at 53.457 kb on - strand, within BWI76_RS00260at 53.671 kb on - strand, within BWI76_RS00260at 53.687 kb on + strand, within BWI76_RS00260at 53.855 kb on - strand, within BWI76_RS00260at 53.951 kb on - strandat 53.951 kb on - strandat 53.951 kb on - strandat 53.993 kb on + strandat 54.028 kb on + strandat 54.089 kb on - strandat 54.093 kb on + strandat 54.142 kb on + strandat 54.142 kb on + strandat 54.142 kb on + strandat 54.142 kb on + strandat 54.150 kb on - strandat 54.163 kb on + strandat 54.184 kb on + strandat 54.342 kb on + strandat 54.344 kb on + strandat 54.351 kb on - strandat 54.351 kb on - strandat 54.392 kb on + strandat 54.506 kb on - strand, within BWI76_RS00265at 54.568 kb on + strand, within BWI76_RS00265at 54.568 kb on + strand, within BWI76_RS00265at 54.576 kb on - strandat 54.618 kb on + strand, within BWI76_RS00265at 54.687 kb on - strand, within BWI76_RS00265at 54.803 kb on + strand, within BWI76_RS00265at 54.838 kb on - strand, within BWI76_RS00265at 54.854 kb on - strand, within BWI76_RS00265at 54.924 kb on - strand, within BWI76_RS00265at 55.033 kb on + strand, within BWI76_RS00265at 55.033 kb on + strand, within BWI76_RS00265at 55.041 kb on - strand, within BWI76_RS00265at 55.041 kb on - strand, within BWI76_RS00265at 55.046 kb on - strand, within BWI76_RS00265at 55.156 kb on - strand, within BWI76_RS00265at 55.172 kb on - strand, within BWI76_RS00265at 55.192 kb on - strand, within BWI76_RS00265at 55.260 kb on + strand, within BWI76_RS00265at 55.336 kb on + strand, within BWI76_RS00265at 55.336 kb on + strand, within BWI76_RS00265at 55.336 kb on + strandat 55.336 kb on + strand, within BWI76_RS00265at 55.344 kb on - strand, within BWI76_RS00265at 55.358 kb on + strand, within BWI76_RS00265at 55.360 kb on + strand, within BWI76_RS00265at 55.368 kb on - strand, within BWI76_RS00265at 55.368 kb on - strand, within BWI76_RS00265at 55.580 kb on - strand, within BWI76_RS00265at 55.697 kb on - strand, within BWI76_RS00265at 55.728 kb on + strand, within BWI76_RS00265at 55.745 kb on + strand, within BWI76_RS00265at 55.810 kb on + strand, within BWI76_RS00265at 55.932 kb on + strand, within BWI76_RS00265at 55.932 kb on + strand, within BWI76_RS00265at 55.940 kb on - strandat 56.062 kb on + strandat 56.370 kb on - strand, within BWI76_RS00270at 56.429 kb on + strand, within BWI76_RS00270at 56.435 kb on + strand, within BWI76_RS00270at 56.540 kb on - strand, within BWI76_RS00270at 56.568 kb on + strand, within BWI76_RS00270at 56.576 kb on - strand, within BWI76_RS00270at 56.576 kb on - strand, within BWI76_RS00270at 56.576 kb on - strand, within BWI76_RS00270at 56.578 kb on + strand, within BWI76_RS00270at 56.738 kb on + strandat 56.747 kb on - strandat 56.943 kb on + strand, within BWI76_RS00275

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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53,362 + BWI76_RS00260 0.55 +0.2
53,417 - BWI76_RS00260 0.58 +0.4
53,417 - BWI76_RS00260 0.58 +0.2
53,441 + BWI76_RS00260 0.60 -2.4
53,457 - BWI76_RS00260 0.61 +0.3
53,671 - BWI76_RS00260 0.75 +0.3
53,687 + BWI76_RS00260 0.76 -0.3
53,855 - BWI76_RS00260 0.88 -0.3
53,951 - +0.7
53,951 - +0.7
53,951 - +0.1
53,993 + +0.2
54,028 + +2.1
54,089 - +0.4
54,093 + +0.5
54,142 + +2.5
54,142 + -0.2
54,142 + +0.1
54,142 + +0.9
54,150 - +0.7
54,163 + +0.5
54,184 + -1.1
54,342 + +0.0
54,344 + +0.4
54,351 - +0.8
54,351 - -0.0
54,392 + +0.4
54,506 - BWI76_RS00265 0.13 -0.4
54,568 + BWI76_RS00265 0.17 -0.2
54,568 + BWI76_RS00265 0.17 +0.6
54,576 - +1.5
54,618 + BWI76_RS00265 0.19 -0.2
54,687 - BWI76_RS00265 0.23 -0.2
54,803 + BWI76_RS00265 0.29 +0.4
54,838 - BWI76_RS00265 0.31 +1.8
54,854 - BWI76_RS00265 0.32 -1.0
54,924 - BWI76_RS00265 0.36 -1.3
55,033 + BWI76_RS00265 0.41 -1.1
55,033 + BWI76_RS00265 0.41 +1.6
55,041 - BWI76_RS00265 0.42 +0.6
55,041 - BWI76_RS00265 0.42 +0.1
55,046 - BWI76_RS00265 0.42 +0.9
55,156 - BWI76_RS00265 0.48 -0.1
55,172 - BWI76_RS00265 0.49 +1.5
55,192 - BWI76_RS00265 0.50 +1.1
55,260 + BWI76_RS00265 0.54 -1.2
55,336 + BWI76_RS00265 0.58 +0.5
55,336 + BWI76_RS00265 0.58 +0.4
55,336 + -0.8
55,336 + BWI76_RS00265 0.58 +1.1
55,344 - BWI76_RS00265 0.58 -0.6
55,358 + BWI76_RS00265 0.59 +0.8
55,360 + BWI76_RS00265 0.59 -0.1
55,368 - BWI76_RS00265 0.59 -0.9
55,368 - BWI76_RS00265 0.59 +0.7
55,580 - BWI76_RS00265 0.71 +0.5
55,697 - BWI76_RS00265 0.77 +1.4
55,728 + BWI76_RS00265 0.79 -2.5
55,745 + BWI76_RS00265 0.80 +1.0
55,810 + BWI76_RS00265 0.83 +2.9
55,932 + BWI76_RS00265 0.90 -0.1
55,932 + BWI76_RS00265 0.90 +0.5
55,940 - +0.5
56,062 + +0.2
56,370 - BWI76_RS00270 0.15 +0.2
56,429 + BWI76_RS00270 0.29 +0.4
56,435 + BWI76_RS00270 0.30 +0.2
56,540 - BWI76_RS00270 0.55 +1.1
56,568 + BWI76_RS00270 0.62 -3.2
56,576 - BWI76_RS00270 0.64 -0.2
56,576 - BWI76_RS00270 0.64 +0.7
56,576 - BWI76_RS00270 0.64 +0.8
56,578 + BWI76_RS00270 0.64 -0.6
56,738 + +1.5
56,747 - -0.2
56,943 + BWI76_RS00275 0.14 +0.8

Or see this region's nucleotide sequence