Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23765

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23750 and BWI76_RS23755 are separated by 52 nucleotidesBWI76_RS23755 and BWI76_RS23760 are separated by 159 nucleotidesBWI76_RS23760 and BWI76_RS23765 are separated by 80 nucleotidesBWI76_RS23765 and BWI76_RS23770 are separated by 89 nucleotides BWI76_RS23750: BWI76_RS23750 - arsenical efflux pump membrane protein ArsB, at 4,959,191 to 4,960,483 _RS23750 BWI76_RS23755: BWI76_RS23755 - transcriptional regulator, at 4,960,536 to 4,960,886 _RS23755 BWI76_RS23760: BWI76_RS23760 - tRNA-Gly, at 4,961,046 to 4,961,119 _RS23760 BWI76_RS23765: BWI76_RS23765 - peptidase M23, at 4,961,200 to 4,961,925 _RS23765 BWI76_RS23770: BWI76_RS23770 - LysR family transcriptional regulator, at 4,962,015 to 4,962,911 _RS23770 Position (kb) 4961 4962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4960.243 kb on + strand, within BWI76_RS23750at 4960.243 kb on + strand, within BWI76_RS23750at 4960.331 kb on + strand, within BWI76_RS23750at 4960.382 kb on - strandat 4960.415 kb on + strandat 4960.415 kb on + strandat 4960.559 kb on + strandat 4960.598 kb on + strand, within BWI76_RS23755at 4960.687 kb on + strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.695 kb on - strand, within BWI76_RS23755at 4960.766 kb on + strand, within BWI76_RS23755at 4960.766 kb on + strand, within BWI76_RS23755at 4960.874 kb on - strandat 4960.927 kb on - strandat 4961.000 kb on + strandat 4961.061 kb on - strand, within BWI76_RS23760at 4961.138 kb on + strandat 4961.372 kb on - strand, within BWI76_RS23765at 4961.383 kb on + strand, within BWI76_RS23765at 4961.598 kb on + strand, within BWI76_RS23765at 4961.710 kb on - strand, within BWI76_RS23765at 4961.782 kb on - strand, within BWI76_RS23765at 4961.822 kb on - strand, within BWI76_RS23765at 4961.929 kb on - strandat 4961.931 kb on + strandat 4961.949 kb on + strandat 4961.983 kb on - strandat 4961.995 kb on - strandat 4962.020 kb on - strandat 4962.071 kb on + strandat 4962.076 kb on + strandat 4962.076 kb on + strandat 4962.076 kb on + strandat 4962.079 kb on - strandat 4962.153 kb on + strand, within BWI76_RS23770at 4962.157 kb on - strand, within BWI76_RS23770at 4962.171 kb on - strand, within BWI76_RS23770at 4962.188 kb on - strand, within BWI76_RS23770at 4962.202 kb on + strand, within BWI76_RS23770at 4962.227 kb on - strand, within BWI76_RS23770at 4962.229 kb on + strand, within BWI76_RS23770at 4962.230 kb on + strand, within BWI76_RS23770at 4962.232 kb on - strand, within BWI76_RS23770at 4962.237 kb on - strand, within BWI76_RS23770at 4962.237 kb on - strand, within BWI76_RS23770at 4962.277 kb on - strand, within BWI76_RS23770at 4962.277 kb on - strand, within BWI76_RS23770at 4962.305 kb on - strand, within BWI76_RS23770at 4962.344 kb on - strand, within BWI76_RS23770at 4962.377 kb on - strand, within BWI76_RS23770at 4962.381 kb on - strand, within BWI76_RS23770at 4962.412 kb on + strand, within BWI76_RS23770at 4962.422 kb on + strand, within BWI76_RS23770at 4962.422 kb on + strand, within BWI76_RS23770at 4962.429 kb on - strand, within BWI76_RS23770at 4962.429 kb on - strand, within BWI76_RS23770at 4962.431 kb on + strand, within BWI76_RS23770at 4962.431 kb on + strand, within BWI76_RS23770at 4962.431 kb on + strand, within BWI76_RS23770at 4962.431 kb on + strand, within BWI76_RS23770at 4962.431 kb on + strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.439 kb on - strand, within BWI76_RS23770at 4962.454 kb on + strand, within BWI76_RS23770at 4962.454 kb on + strand, within BWI76_RS23770at 4962.454 kb on - strand, within BWI76_RS23770at 4962.455 kb on - strand, within BWI76_RS23770at 4962.463 kb on + strand, within BWI76_RS23770at 4962.463 kb on + strand, within BWI76_RS23770at 4962.465 kb on - strand, within BWI76_RS23770at 4962.471 kb on - strand, within BWI76_RS23770at 4962.476 kb on + strand, within BWI76_RS23770at 4962.476 kb on + strand, within BWI76_RS23770at 4962.476 kb on + strand, within BWI76_RS23770at 4962.476 kb on + strand, within BWI76_RS23770at 4962.476 kb on + strand, within BWI76_RS23770at 4962.476 kb on + strand, within BWI76_RS23770at 4962.477 kb on + strand, within BWI76_RS23770at 4962.477 kb on + strand, within BWI76_RS23770at 4962.478 kb on + strand, within BWI76_RS23770at 4962.484 kb on - strand, within BWI76_RS23770at 4962.484 kb on - strand, within BWI76_RS23770at 4962.484 kb on - strand, within BWI76_RS23770at 4962.484 kb on - strand, within BWI76_RS23770at 4962.485 kb on - strand, within BWI76_RS23770at 4962.498 kb on + strand, within BWI76_RS23770at 4962.506 kb on - strand, within BWI76_RS23770at 4962.513 kb on + strand, within BWI76_RS23770at 4962.513 kb on - strand, within BWI76_RS23770at 4962.532 kb on - strand, within BWI76_RS23770at 4962.532 kb on - strand, within BWI76_RS23770at 4962.570 kb on - strandat 4962.571 kb on + strand, within BWI76_RS23770at 4962.585 kb on + strand, within BWI76_RS23770at 4962.585 kb on - strand, within BWI76_RS23770at 4962.625 kb on - strand, within BWI76_RS23770at 4962.625 kb on - strand, within BWI76_RS23770at 4962.626 kb on - strand, within BWI76_RS23770at 4962.638 kb on - strand, within BWI76_RS23770at 4962.640 kb on + strand, within BWI76_RS23770at 4962.677 kb on + strand, within BWI76_RS23770at 4962.683 kb on + strand, within BWI76_RS23770at 4962.683 kb on + strand, within BWI76_RS23770at 4962.692 kb on + strand, within BWI76_RS23770at 4962.701 kb on - strand, within BWI76_RS23770at 4962.718 kb on - strand, within BWI76_RS23770at 4962.743 kb on + strand, within BWI76_RS23770at 4962.751 kb on - strand, within BWI76_RS23770at 4962.751 kb on - strand, within BWI76_RS23770at 4962.788 kb on + strand, within BWI76_RS23770at 4962.788 kb on + strand, within BWI76_RS23770at 4962.822 kb on + strandat 4962.834 kb on + strandat 4962.834 kb on + strandat 4962.834 kb on + strandat 4962.834 kb on + strandat 4962.834 kb on + strandat 4962.834 kb on + strandat 4962.836 kb on + strandat 4962.842 kb on - strandat 4962.842 kb on - strandat 4962.842 kb on - strandat 4962.842 kb on - strandat 4962.858 kb on + strandat 4962.859 kb on + strandat 4962.862 kb on - strandat 4962.867 kb on + strandat 4962.868 kb on + strandat 4962.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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4,960,243 + BWI76_RS23750 0.81 -1.3
4,960,243 + BWI76_RS23750 0.81 -0.9
4,960,331 + BWI76_RS23750 0.88 +0.3
4,960,382 - -0.7
4,960,415 + +0.6
4,960,415 + -1.3
4,960,559 + -1.2
4,960,598 + BWI76_RS23755 0.18 +0.1
4,960,687 + BWI76_RS23755 0.43 +0.6
4,960,695 - BWI76_RS23755 0.45 +0.8
4,960,695 - BWI76_RS23755 0.45 +0.3
4,960,695 - BWI76_RS23755 0.45 +0.3
4,960,695 - BWI76_RS23755 0.45 -0.1
4,960,766 + BWI76_RS23755 0.66 -1.9
4,960,766 + BWI76_RS23755 0.66 +0.9
4,960,874 - +0.8
4,960,927 - -0.2
4,961,000 + +0.4
4,961,061 - BWI76_RS23760 0.20 +0.2
4,961,138 + +0.6
4,961,372 - BWI76_RS23765 0.24 -1.4
4,961,383 + BWI76_RS23765 0.25 +0.6
4,961,598 + BWI76_RS23765 0.55 -0.4
4,961,710 - BWI76_RS23765 0.70 +0.2
4,961,782 - BWI76_RS23765 0.80 -2.0
4,961,822 - BWI76_RS23765 0.86 -1.8
4,961,929 - +0.2
4,961,931 + -1.0
4,961,949 + -0.7
4,961,983 - +0.2
4,961,995 - +2.4
4,962,020 - +0.6
4,962,071 + +0.2
4,962,076 + -0.4
4,962,076 + +0.2
4,962,076 + -2.2
4,962,079 - -0.9
4,962,153 + BWI76_RS23770 0.15 +2.3
4,962,157 - BWI76_RS23770 0.16 -0.4
4,962,171 - BWI76_RS23770 0.17 +0.5
4,962,188 - BWI76_RS23770 0.19 +0.8
4,962,202 + BWI76_RS23770 0.21 -1.4
4,962,227 - BWI76_RS23770 0.24 -0.8
4,962,229 + BWI76_RS23770 0.24 -0.5
4,962,230 + BWI76_RS23770 0.24 +1.1
4,962,232 - BWI76_RS23770 0.24 +0.8
4,962,237 - BWI76_RS23770 0.25 -0.7
4,962,237 - BWI76_RS23770 0.25 +0.8
4,962,277 - BWI76_RS23770 0.29 -1.3
4,962,277 - BWI76_RS23770 0.29 +0.6
4,962,305 - BWI76_RS23770 0.32 +0.7
4,962,344 - BWI76_RS23770 0.37 -0.8
4,962,377 - BWI76_RS23770 0.40 -0.6
4,962,381 - BWI76_RS23770 0.41 -1.2
4,962,412 + BWI76_RS23770 0.44 +0.9
4,962,422 + BWI76_RS23770 0.45 +1.6
4,962,422 + BWI76_RS23770 0.45 +0.4
4,962,429 - BWI76_RS23770 0.46 +0.5
4,962,429 - BWI76_RS23770 0.46 -0.1
4,962,431 + BWI76_RS23770 0.46 +0.6
4,962,431 + BWI76_RS23770 0.46 -1.0
4,962,431 + BWI76_RS23770 0.46 +0.1
4,962,431 + BWI76_RS23770 0.46 -0.5
4,962,431 + BWI76_RS23770 0.46 -1.3
4,962,439 - BWI76_RS23770 0.47 +0.0
4,962,439 - BWI76_RS23770 0.47 -0.2
4,962,439 - BWI76_RS23770 0.47 +0.5
4,962,439 - BWI76_RS23770 0.47 +1.5
4,962,439 - BWI76_RS23770 0.47 +0.1
4,962,439 - BWI76_RS23770 0.47 +0.9
4,962,439 - BWI76_RS23770 0.47 -0.4
4,962,439 - BWI76_RS23770 0.47 -1.4
4,962,439 - BWI76_RS23770 0.47 +0.2
4,962,439 - BWI76_RS23770 0.47 -2.3
4,962,439 - BWI76_RS23770 0.47 -1.0
4,962,439 - BWI76_RS23770 0.47 +0.7
4,962,454 + BWI76_RS23770 0.49 +0.3
4,962,454 + BWI76_RS23770 0.49 -0.1
4,962,454 - BWI76_RS23770 0.49 -1.8
4,962,455 - BWI76_RS23770 0.49 -0.8
4,962,463 + BWI76_RS23770 0.50 +0.0
4,962,463 + BWI76_RS23770 0.50 -1.4
4,962,465 - BWI76_RS23770 0.50 -0.3
4,962,471 - BWI76_RS23770 0.51 -0.9
4,962,476 + BWI76_RS23770 0.51 -0.3
4,962,476 + BWI76_RS23770 0.51 -0.3
4,962,476 + BWI76_RS23770 0.51 -0.6
4,962,476 + BWI76_RS23770 0.51 +1.3
4,962,476 + BWI76_RS23770 0.51 -1.2
4,962,476 + BWI76_RS23770 0.51 +0.7
4,962,477 + BWI76_RS23770 0.52 +0.1
4,962,477 + BWI76_RS23770 0.52 -0.1
4,962,478 + BWI76_RS23770 0.52 +0.9
4,962,484 - BWI76_RS23770 0.52 -1.3
4,962,484 - BWI76_RS23770 0.52 -0.2
4,962,484 - BWI76_RS23770 0.52 +2.4
4,962,484 - BWI76_RS23770 0.52 -0.7
4,962,485 - BWI76_RS23770 0.52 -2.2
4,962,498 + BWI76_RS23770 0.54 +0.7
4,962,506 - BWI76_RS23770 0.55 -1.3
4,962,513 + BWI76_RS23770 0.56 -0.2
4,962,513 - BWI76_RS23770 0.56 +0.2
4,962,532 - BWI76_RS23770 0.58 +0.4
4,962,532 - BWI76_RS23770 0.58 +0.2
4,962,570 - -0.4
4,962,571 + BWI76_RS23770 0.62 -2.2
4,962,585 + BWI76_RS23770 0.64 -1.4
4,962,585 - BWI76_RS23770 0.64 +0.3
4,962,625 - BWI76_RS23770 0.68 -2.6
4,962,625 - BWI76_RS23770 0.68 -2.6
4,962,626 - BWI76_RS23770 0.68 +0.2
4,962,638 - BWI76_RS23770 0.69 -0.9
4,962,640 + BWI76_RS23770 0.70 +0.9
4,962,677 + BWI76_RS23770 0.74 +0.7
4,962,683 + BWI76_RS23770 0.74 +0.0
4,962,683 + BWI76_RS23770 0.74 -0.2
4,962,692 + BWI76_RS23770 0.75 -0.4
4,962,701 - BWI76_RS23770 0.76 +0.7
4,962,718 - BWI76_RS23770 0.78 -3.5
4,962,743 + BWI76_RS23770 0.81 -3.0
4,962,751 - BWI76_RS23770 0.82 +0.7
4,962,751 - BWI76_RS23770 0.82 -0.6
4,962,788 + BWI76_RS23770 0.86 -0.5
4,962,788 + BWI76_RS23770 0.86 +0.6
4,962,822 + +0.8
4,962,834 + -0.3
4,962,834 + -0.3
4,962,834 + -2.6
4,962,834 + -0.6
4,962,834 + -0.6
4,962,834 + +0.6
4,962,836 + +0.7
4,962,842 - -0.1
4,962,842 - -0.4
4,962,842 - -1.4
4,962,842 - +0.3
4,962,858 + +0.8
4,962,859 + -0.7
4,962,862 - +0.3
4,962,867 + +0.6
4,962,868 + -2.2
4,962,908 - -3.1

Or see this region's nucleotide sequence