Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19395 and BWI76_RS19400 are separated by 2 nucleotides BWI76_RS19400 and BWI76_RS19405 are separated by 155 nucleotides
BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625
_RS19395
BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971
_RS19400
BWI76_RS19405: BWI76_RS19405 - LysR family transcriptional regulator, at 4,048,127 to 4,049,047
_RS19405
Position (kb)
4046
4047
4048 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4045.695 kb on + strand, within BWI76_RS19395 at 4045.879 kb on - strand, within BWI76_RS19395 at 4045.928 kb on + strand, within BWI76_RS19395 at 4046.039 kb on + strand, within BWI76_RS19395 at 4046.100 kb on - strand, within BWI76_RS19395 at 4046.116 kb on - strand, within BWI76_RS19395 at 4046.118 kb on + strand, within BWI76_RS19395 at 4046.369 kb on + strand, within BWI76_RS19395 at 4046.485 kb on + strand at 4046.829 kb on + strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.913 kb on + strand, within BWI76_RS19400 at 4046.921 kb on - strand, within BWI76_RS19400 at 4047.126 kb on + strand, within BWI76_RS19400 at 4047.268 kb on + strand, within BWI76_RS19400 at 4047.306 kb on - strand, within BWI76_RS19400 at 4047.447 kb on + strand, within BWI76_RS19400 at 4047.681 kb on + strand, within BWI76_RS19400 at 4047.730 kb on + strand, within BWI76_RS19400 at 4047.755 kb on - strand, within BWI76_RS19400 at 4047.816 kb on - strand, within BWI76_RS19400 at 4047.862 kb on + strand at 4047.973 kb on - strand at 4048.109 kb on - strand at 4048.185 kb on + strand at 4048.361 kb on + strand, within BWI76_RS19405 at 4048.520 kb on + strand, within BWI76_RS19405 at 4048.842 kb on + strand, within BWI76_RS19405
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 4,045,695 + BWI76_RS19395 0.49 +0.8 4,045,879 - BWI76_RS19395 0.59 -0.2 4,045,928 + BWI76_RS19395 0.61 +2.2 4,046,039 + BWI76_RS19395 0.68 +1.7 4,046,100 - BWI76_RS19395 0.71 +0.8 4,046,116 - BWI76_RS19395 0.72 +2.8 4,046,118 + BWI76_RS19395 0.72 -0.5 4,046,369 + BWI76_RS19395 0.86 -0.7 4,046,485 + +1.2 4,046,829 + BWI76_RS19400 0.15 -0.3 4,046,837 - BWI76_RS19400 0.16 +1.7 4,046,837 - BWI76_RS19400 0.16 +0.3 4,046,837 - BWI76_RS19400 0.16 -4.3 4,046,913 + BWI76_RS19400 0.21 +0.4 4,046,921 - BWI76_RS19400 0.22 -0.8 4,047,126 + BWI76_RS19400 0.37 -0.1 4,047,268 + BWI76_RS19400 0.48 -2.1 4,047,306 - BWI76_RS19400 0.50 +0.0 4,047,447 + BWI76_RS19400 0.61 -0.8 4,047,681 + BWI76_RS19400 0.78 +0.7 4,047,730 + BWI76_RS19400 0.82 -0.4 4,047,755 - BWI76_RS19400 0.84 -1.9 4,047,816 - BWI76_RS19400 0.88 +1.6 4,047,862 + +0.1 4,047,973 - +0.7 4,048,109 - +0.3 4,048,185 + -1.5 4,048,361 + BWI76_RS19405 0.25 -1.2 4,048,520 + BWI76_RS19405 0.43 -1.1 4,048,842 + BWI76_RS19405 0.78 +0.9
Or see this region's nucleotide sequence