Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19400

Experiment: K. M5a1 KLEB23 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19395 and BWI76_RS19400 are separated by 2 nucleotidesBWI76_RS19400 and BWI76_RS19405 are separated by 155 nucleotides BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625 _RS19395 BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971 _RS19400 BWI76_RS19405: BWI76_RS19405 - LysR family transcriptional regulator, at 4,048,127 to 4,049,047 _RS19405 Position (kb) 4046 4047 4048Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4045.695 kb on + strand, within BWI76_RS19395at 4045.879 kb on - strand, within BWI76_RS19395at 4045.928 kb on + strand, within BWI76_RS19395at 4046.039 kb on + strand, within BWI76_RS19395at 4046.100 kb on - strand, within BWI76_RS19395at 4046.116 kb on - strand, within BWI76_RS19395at 4046.118 kb on + strand, within BWI76_RS19395at 4046.369 kb on + strand, within BWI76_RS19395at 4046.485 kb on + strandat 4046.829 kb on + strand, within BWI76_RS19400at 4046.837 kb on - strand, within BWI76_RS19400at 4046.837 kb on - strand, within BWI76_RS19400at 4046.837 kb on - strand, within BWI76_RS19400at 4046.913 kb on + strand, within BWI76_RS19400at 4046.921 kb on - strand, within BWI76_RS19400at 4047.126 kb on + strand, within BWI76_RS19400at 4047.268 kb on + strand, within BWI76_RS19400at 4047.306 kb on - strand, within BWI76_RS19400at 4047.447 kb on + strand, within BWI76_RS19400at 4047.681 kb on + strand, within BWI76_RS19400at 4047.730 kb on + strand, within BWI76_RS19400at 4047.755 kb on - strand, within BWI76_RS19400at 4047.816 kb on - strand, within BWI76_RS19400at 4047.862 kb on + strandat 4047.973 kb on - strandat 4048.109 kb on - strandat 4048.185 kb on + strandat 4048.361 kb on + strand, within BWI76_RS19405at 4048.520 kb on + strand, within BWI76_RS19405at 4048.842 kb on + strand, within BWI76_RS19405

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
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4,045,695 + BWI76_RS19395 0.49 +0.8
4,045,879 - BWI76_RS19395 0.59 -0.2
4,045,928 + BWI76_RS19395 0.61 +2.2
4,046,039 + BWI76_RS19395 0.68 +1.7
4,046,100 - BWI76_RS19395 0.71 +0.8
4,046,116 - BWI76_RS19395 0.72 +2.8
4,046,118 + BWI76_RS19395 0.72 -0.5
4,046,369 + BWI76_RS19395 0.86 -0.7
4,046,485 + +1.2
4,046,829 + BWI76_RS19400 0.15 -0.3
4,046,837 - BWI76_RS19400 0.16 +1.7
4,046,837 - BWI76_RS19400 0.16 +0.3
4,046,837 - BWI76_RS19400 0.16 -4.3
4,046,913 + BWI76_RS19400 0.21 +0.4
4,046,921 - BWI76_RS19400 0.22 -0.8
4,047,126 + BWI76_RS19400 0.37 -0.1
4,047,268 + BWI76_RS19400 0.48 -2.1
4,047,306 - BWI76_RS19400 0.50 +0.0
4,047,447 + BWI76_RS19400 0.61 -0.8
4,047,681 + BWI76_RS19400 0.78 +0.7
4,047,730 + BWI76_RS19400 0.82 -0.4
4,047,755 - BWI76_RS19400 0.84 -1.9
4,047,816 - BWI76_RS19400 0.88 +1.6
4,047,862 + +0.1
4,047,973 - +0.7
4,048,109 - +0.3
4,048,185 + -1.5
4,048,361 + BWI76_RS19405 0.25 -1.2
4,048,520 + BWI76_RS19405 0.43 -1.1
4,048,842 + BWI76_RS19405 0.78 +0.9

Or see this region's nucleotide sequence