Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17555

Experiment: K. M5a1 KLEB23 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17550 and BWI76_RS17555 are separated by 510 nucleotidesBWI76_RS17555 and BWI76_RS17560 are separated by 136 nucleotides BWI76_RS17550: BWI76_RS17550 - oxidoreductase (Fe-S)-binding subunit, at 3,641,215 to 3,643,155 _RS17550 BWI76_RS17555: BWI76_RS17555 - permease, at 3,643,666 to 3,645,138 _RS17555 BWI76_RS17560: BWI76_RS17560 - formate dehydrogenase subunit alpha, at 3,645,275 to 3,647,422 _RS17560 Position (kb) 3643 3644 3645 3646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3642.698 kb on + strand, within BWI76_RS17550at 3642.774 kb on - strand, within BWI76_RS17550at 3642.922 kb on + strand, within BWI76_RS17550at 3642.992 kb on + strandat 3643.077 kb on - strandat 3643.096 kb on - strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.101 kb on - strandat 3643.106 kb on - strandat 3643.106 kb on - strandat 3643.106 kb on - strandat 3643.106 kb on - strandat 3643.113 kb on + strandat 3643.113 kb on + strandat 3643.171 kb on + strandat 3643.180 kb on - strandat 3643.180 kb on - strandat 3643.180 kb on - strandat 3643.192 kb on - strandat 3643.243 kb on - strandat 3643.334 kb on + strandat 3643.334 kb on + strandat 3643.342 kb on - strandat 3643.342 kb on - strandat 3643.342 kb on - strandat 3643.342 kb on - strandat 3643.397 kb on + strandat 3643.397 kb on - strandat 3643.531 kb on + strandat 3643.531 kb on + strandat 3643.531 kb on + strandat 3643.531 kb on + strandat 3643.538 kb on - strandat 3643.539 kb on - strandat 3643.539 kb on - strandat 3643.539 kb on - strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.549 kb on - strandat 3643.551 kb on - strandat 3643.551 kb on - strandat 3643.553 kb on + strandat 3643.561 kb on - strandat 3643.567 kb on + strandat 3643.573 kb on - strandat 3643.591 kb on - strandat 3643.621 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.634 kb on - strandat 3643.636 kb on - strandat 3643.636 kb on - strandat 3643.645 kb on - strandat 3643.646 kb on + strandat 3643.659 kb on - strandat 3643.848 kb on - strand, within BWI76_RS17555at 3643.854 kb on + strand, within BWI76_RS17555at 3643.933 kb on - strand, within BWI76_RS17555at 3643.942 kb on + strand, within BWI76_RS17555at 3643.968 kb on + strandat 3644.023 kb on + strand, within BWI76_RS17555at 3644.084 kb on - strand, within BWI76_RS17555at 3644.314 kb on + strand, within BWI76_RS17555at 3644.314 kb on + strand, within BWI76_RS17555at 3644.324 kb on + strand, within BWI76_RS17555at 3644.332 kb on - strand, within BWI76_RS17555at 3644.332 kb on - strand, within BWI76_RS17555at 3644.339 kb on + strand, within BWI76_RS17555at 3644.659 kb on + strand, within BWI76_RS17555at 3644.792 kb on + strand, within BWI76_RS17555at 3644.826 kb on + strand, within BWI76_RS17555at 3644.852 kb on + strand, within BWI76_RS17555at 3645.060 kb on + strandat 3645.132 kb on - strandat 3645.251 kb on + strandat 3645.659 kb on - strand, within BWI76_RS17560at 3645.950 kb on - strand, within BWI76_RS17560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
remove
3,642,698 + BWI76_RS17550 0.76 -0.2
3,642,774 - BWI76_RS17550 0.80 -0.1
3,642,922 + BWI76_RS17550 0.88 -0.3
3,642,992 + -0.2
3,643,077 - +0.6
3,643,096 - +0.6
3,643,098 + -1.6
3,643,098 + -1.0
3,643,098 + -0.0
3,643,098 + +1.9
3,643,098 + +0.6
3,643,098 + -1.4
3,643,101 - +0.2
3,643,106 - -0.4
3,643,106 - +1.2
3,643,106 - -0.8
3,643,106 - +0.6
3,643,113 + -1.1
3,643,113 + -0.4
3,643,171 + -1.9
3,643,180 - -0.4
3,643,180 - -1.3
3,643,180 - -1.0
3,643,192 - +0.4
3,643,243 - +0.7
3,643,334 + +0.3
3,643,334 + +0.4
3,643,342 - +1.0
3,643,342 - -0.2
3,643,342 - +0.6
3,643,342 - +0.8
3,643,397 + +0.8
3,643,397 - -0.4
3,643,531 + -2.0
3,643,531 + -2.2
3,643,531 + +2.2
3,643,531 + +0.2
3,643,538 - -0.2
3,643,539 - -0.3
3,643,539 - -0.0
3,643,539 - +1.0
3,643,543 + -1.0
3,643,543 + +0.8
3,643,543 + -0.1
3,643,543 + +1.1
3,643,543 + -1.1
3,643,543 + -0.5
3,643,543 + -1.4
3,643,543 + -0.7
3,643,543 + +0.5
3,643,543 + +0.3
3,643,549 - +1.2
3,643,551 - +0.4
3,643,551 - -0.7
3,643,553 + +0.8
3,643,561 - -0.5
3,643,567 + +0.4
3,643,573 - -1.0
3,643,591 - +0.2
3,643,621 + -0.7
3,643,626 + -0.1
3,643,626 + -0.6
3,643,626 + -0.4
3,643,626 + -0.1
3,643,626 + -0.1
3,643,634 - -2.2
3,643,636 - -0.4
3,643,636 - +0.3
3,643,645 - -1.0
3,643,646 + -1.2
3,643,659 - +0.2
3,643,848 - BWI76_RS17555 0.12 +0.2
3,643,854 + BWI76_RS17555 0.13 -1.0
3,643,933 - BWI76_RS17555 0.18 -0.7
3,643,942 + BWI76_RS17555 0.19 -1.2
3,643,968 + -0.2
3,644,023 + BWI76_RS17555 0.24 -0.3
3,644,084 - BWI76_RS17555 0.28 -2.2
3,644,314 + BWI76_RS17555 0.44 +0.2
3,644,314 + BWI76_RS17555 0.44 +0.7
3,644,324 + BWI76_RS17555 0.45 -0.5
3,644,332 - BWI76_RS17555 0.45 -1.9
3,644,332 - BWI76_RS17555 0.45 -0.8
3,644,339 + BWI76_RS17555 0.46 -0.4
3,644,659 + BWI76_RS17555 0.67 +0.2
3,644,792 + BWI76_RS17555 0.76 -0.7
3,644,826 + BWI76_RS17555 0.79 +0.7
3,644,852 + BWI76_RS17555 0.81 +0.7
3,645,060 + +0.4
3,645,132 - +0.2
3,645,251 + -4.2
3,645,659 - BWI76_RS17560 0.18 -1.0
3,645,950 - BWI76_RS17560 0.31 -1.4

Or see this region's nucleotide sequence