Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15245 and BWI76_RS15250 are separated by 111 nucleotides BWI76_RS15250 and BWI76_RS15255 are separated by 28 nucleotides BWI76_RS15255 and BWI76_RS15260 overlap by 4 nucleotides BWI76_RS15260 and BWI76_RS15265 are separated by 19 nucleotides
BWI76_RS15245: BWI76_RS15245 - dihydrodipicolinate synthase family protein, at 3,195,372 to 3,196,256
_RS15245
BWI76_RS15250: BWI76_RS15250 - tellurium resistance protein TerC, at 3,196,368 to 3,197,129
_RS15250
BWI76_RS15255: BWI76_RS15255 - hypothetical protein, at 3,197,158 to 3,198,330
_RS15255
BWI76_RS15260: BWI76_RS15260 - hypothetical protein, at 3,198,327 to 3,198,797
_RS15260
BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097
_RS15265
Position (kb)
3197
3198
3199 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3196.173 kb on - strand at 3196.173 kb on - strand at 3196.186 kb on + strand at 3196.191 kb on + strand at 3196.194 kb on - strand at 3196.197 kb on + strand at 3196.198 kb on + strand at 3196.199 kb on - strand at 3196.204 kb on + strand at 3196.205 kb on - strand at 3196.205 kb on - strand at 3196.205 kb on - strand at 3196.212 kb on - strand at 3196.212 kb on - strand at 3196.212 kb on - strand at 3196.351 kb on + strand at 3196.533 kb on + strand, within BWI76_RS15250 at 3197.100 kb on + strand at 3197.199 kb on + strand at 3197.205 kb on + strand at 3197.213 kb on - strand at 3197.224 kb on + strand at 3197.232 kb on + strand at 3197.232 kb on + strand at 3197.237 kb on + strand at 3197.293 kb on - strand at 3197.361 kb on + strand, within BWI76_RS15255 at 3197.373 kb on + strand, within BWI76_RS15255 at 3197.457 kb on + strand, within BWI76_RS15255 at 3197.481 kb on + strand, within BWI76_RS15255 at 3197.516 kb on + strand, within BWI76_RS15255 at 3197.555 kb on + strand, within BWI76_RS15255 at 3197.563 kb on - strand, within BWI76_RS15255 at 3197.605 kb on + strand, within BWI76_RS15255 at 3197.695 kb on + strand, within BWI76_RS15255 at 3198.582 kb on + strand, within BWI76_RS15260 at 3199.228 kb on - strand, within BWI76_RS15265
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 3,196,173 - +0.3 3,196,173 - -3.4 3,196,186 + -0.7 3,196,191 + -0.8 3,196,194 - +1.0 3,196,197 + -0.2 3,196,198 + -0.9 3,196,199 - +1.0 3,196,204 + +1.8 3,196,205 - -0.5 3,196,205 - +1.1 3,196,205 - -0.3 3,196,212 - -0.3 3,196,212 - -3.5 3,196,212 - +0.4 3,196,351 + -0.3 3,196,533 + BWI76_RS15250 0.22 -0.6 3,197,100 + -0.7 3,197,199 + +1.2 3,197,205 + -0.4 3,197,213 - +0.7 3,197,224 + +0.4 3,197,232 + +1.4 3,197,232 + -0.4 3,197,237 + +0.8 3,197,293 - +0.7 3,197,361 + BWI76_RS15255 0.17 -1.2 3,197,373 + BWI76_RS15255 0.18 -3.0 3,197,457 + BWI76_RS15255 0.25 -1.0 3,197,481 + BWI76_RS15255 0.28 -1.6 3,197,516 + BWI76_RS15255 0.31 +0.3 3,197,555 + BWI76_RS15255 0.34 +0.3 3,197,563 - BWI76_RS15255 0.35 -0.4 3,197,605 + BWI76_RS15255 0.38 -1.5 3,197,695 + BWI76_RS15255 0.46 -0.6 3,198,582 + BWI76_RS15260 0.54 -0.6 3,199,228 - BWI76_RS15265 0.32 -0.9
Or see this region's nucleotide sequence