Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09340

Experiment: K. M5a1 KLEB23 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09325 and BWI76_RS09330 are separated by 68 nucleotidesBWI76_RS09330 and BWI76_RS09335 overlap by 4 nucleotidesBWI76_RS09335 and BWI76_RS09340 overlap by 14 nucleotidesBWI76_RS09340 and BWI76_RS09345 overlap by 11 nucleotidesBWI76_RS09345 and BWI76_RS09350 overlap by 4 nucleotides BWI76_RS09325: BWI76_RS09325 - putative bacteriophage tail completion protein, at 1,958,420 to 1,958,866 _RS09325 BWI76_RS09330: BWI76_RS09330 - baseplate assembly protein V, at 1,958,935 to 1,959,507 _RS09330 BWI76_RS09335: BWI76_RS09335 - baseplate assembly protein W, at 1,959,504 to 1,959,866 _RS09335 BWI76_RS09340: BWI76_RS09340 - baseplate assembly protein J, at 1,959,853 to 1,960,761 _RS09340 BWI76_RS09345: BWI76_RS09345 - phage tail protein I, at 1,960,751 to 1,961,359 _RS09345 BWI76_RS09350: BWI76_RS09350 - hypothetical protein, at 1,961,356 to 1,963,533 _RS09350 Position (kb) 1959 1960 1961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1959.352 kb on + strand, within BWI76_RS09330at 1959.433 kb on + strand, within BWI76_RS09330at 1959.775 kb on + strand, within BWI76_RS09335at 1959.901 kb on - strandat 1960.048 kb on - strand, within BWI76_RS09340at 1960.156 kb on + strand, within BWI76_RS09340at 1960.366 kb on + strand, within BWI76_RS09340at 1960.416 kb on + strand, within BWI76_RS09340at 1960.429 kb on - strand, within BWI76_RS09340at 1960.434 kb on - strand, within BWI76_RS09340at 1960.554 kb on - strand, within BWI76_RS09340at 1960.618 kb on - strand, within BWI76_RS09340at 1960.701 kb on - strandat 1960.815 kb on - strand, within BWI76_RS09345at 1960.950 kb on + strand, within BWI76_RS09345at 1960.955 kb on + strand, within BWI76_RS09345at 1960.969 kb on + strand, within BWI76_RS09345at 1960.977 kb on - strand, within BWI76_RS09345at 1960.979 kb on + strand, within BWI76_RS09345at 1960.987 kb on - strand, within BWI76_RS09345at 1960.987 kb on - strand, within BWI76_RS09345at 1961.024 kb on + strand, within BWI76_RS09345at 1961.032 kb on - strand, within BWI76_RS09345at 1961.037 kb on - strand, within BWI76_RS09345at 1961.037 kb on - strand, within BWI76_RS09345at 1961.043 kb on + strand, within BWI76_RS09345at 1961.043 kb on + strand, within BWI76_RS09345at 1961.043 kb on + strand, within BWI76_RS09345at 1961.043 kb on + strand, within BWI76_RS09345at 1961.043 kb on + strand, within BWI76_RS09345at 1961.044 kb on - strand, within BWI76_RS09345at 1961.051 kb on - strand, within BWI76_RS09345at 1961.051 kb on - strand, within BWI76_RS09345at 1961.060 kb on - strand, within BWI76_RS09345at 1961.063 kb on + strand, within BWI76_RS09345at 1961.071 kb on - strand, within BWI76_RS09345at 1961.101 kb on + strand, within BWI76_RS09345at 1961.115 kb on + strand, within BWI76_RS09345at 1961.115 kb on + strand, within BWI76_RS09345at 1961.115 kb on + strand, within BWI76_RS09345at 1961.115 kb on + strand, within BWI76_RS09345at 1961.118 kb on + strand, within BWI76_RS09345at 1961.121 kb on - strand, within BWI76_RS09345at 1961.123 kb on - strand, within BWI76_RS09345at 1961.125 kb on + strand, within BWI76_RS09345at 1961.126 kb on - strand, within BWI76_RS09345at 1961.149 kb on + strand, within BWI76_RS09345at 1961.196 kb on + strand, within BWI76_RS09345at 1961.196 kb on + strand, within BWI76_RS09345at 1961.196 kb on + strand, within BWI76_RS09345at 1961.201 kb on + strand, within BWI76_RS09345at 1961.204 kb on - strand, within BWI76_RS09345at 1961.204 kb on - strand, within BWI76_RS09345at 1961.208 kb on + strand, within BWI76_RS09345at 1961.208 kb on + strand, within BWI76_RS09345at 1961.208 kb on + strandat 1961.208 kb on + strand, within BWI76_RS09345at 1961.208 kb on + strand, within BWI76_RS09345at 1961.209 kb on + strand, within BWI76_RS09345at 1961.216 kb on - strand, within BWI76_RS09345at 1961.216 kb on - strandat 1961.216 kb on - strand, within BWI76_RS09345at 1961.216 kb on - strand, within BWI76_RS09345at 1961.216 kb on - strand, within BWI76_RS09345at 1961.240 kb on + strand, within BWI76_RS09345at 1961.276 kb on + strand, within BWI76_RS09345at 1961.277 kb on + strand, within BWI76_RS09345at 1961.277 kb on + strand, within BWI76_RS09345at 1961.277 kb on + strand, within BWI76_RS09345at 1961.277 kb on + strand, within BWI76_RS09345at 1961.278 kb on + strand, within BWI76_RS09345at 1961.448 kb on + strandat 1961.503 kb on + strandat 1961.503 kb on + strandat 1961.503 kb on + strandat 1961.503 kb on + strandat 1961.503 kb on + strandat 1961.517 kb on + strandat 1961.522 kb on + strandat 1961.525 kb on - strandat 1961.556 kb on + strandat 1961.564 kb on - strandat 1961.615 kb on + strand, within BWI76_RS09350at 1961.621 kb on + strand, within BWI76_RS09350at 1961.629 kb on - strand, within BWI76_RS09350at 1961.633 kb on + strand, within BWI76_RS09350at 1961.633 kb on + strand, within BWI76_RS09350at 1961.633 kb on + strand, within BWI76_RS09350at 1961.635 kb on + strand, within BWI76_RS09350at 1961.635 kb on + strand, within BWI76_RS09350at 1961.641 kb on - strand, within BWI76_RS09350at 1961.641 kb on - strand, within BWI76_RS09350at 1961.643 kb on - strand, within BWI76_RS09350at 1961.643 kb on - strand, within BWI76_RS09350at 1961.643 kb on - strand, within BWI76_RS09350at 1961.668 kb on + strand, within BWI76_RS09350at 1961.675 kb on - strand, within BWI76_RS09350at 1961.700 kb on + strand, within BWI76_RS09350at 1961.708 kb on - strand, within BWI76_RS09350at 1961.716 kb on + strand, within BWI76_RS09350at 1961.721 kb on + strand, within BWI76_RS09350at 1961.724 kb on - strand, within BWI76_RS09350at 1961.736 kb on + strand, within BWI76_RS09350at 1961.743 kb on + strand, within BWI76_RS09350at 1961.760 kb on + strand, within BWI76_RS09350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1
remove
1,959,352 + BWI76_RS09330 0.73 -0.7
1,959,433 + BWI76_RS09330 0.87 +0.2
1,959,775 + BWI76_RS09335 0.75 -1.2
1,959,901 - -3.0
1,960,048 - BWI76_RS09340 0.21 -0.8
1,960,156 + BWI76_RS09340 0.33 +0.1
1,960,366 + BWI76_RS09340 0.56 -1.1
1,960,416 + BWI76_RS09340 0.62 -2.0
1,960,429 - BWI76_RS09340 0.63 -4.1
1,960,434 - BWI76_RS09340 0.64 +0.3
1,960,554 - BWI76_RS09340 0.77 -1.5
1,960,618 - BWI76_RS09340 0.84 +1.0
1,960,701 - -1.5
1,960,815 - BWI76_RS09345 0.11 -0.9
1,960,950 + BWI76_RS09345 0.33 -1.0
1,960,955 + BWI76_RS09345 0.33 -0.4
1,960,969 + BWI76_RS09345 0.36 +0.1
1,960,977 - BWI76_RS09345 0.37 +0.4
1,960,979 + BWI76_RS09345 0.37 -1.2
1,960,987 - BWI76_RS09345 0.39 +0.4
1,960,987 - BWI76_RS09345 0.39 +0.4
1,961,024 + BWI76_RS09345 0.45 -0.8
1,961,032 - BWI76_RS09345 0.46 -2.5
1,961,037 - BWI76_RS09345 0.47 +0.3
1,961,037 - BWI76_RS09345 0.47 +2.7
1,961,043 + BWI76_RS09345 0.48 -0.5
1,961,043 + BWI76_RS09345 0.48 -1.7
1,961,043 + BWI76_RS09345 0.48 -2.1
1,961,043 + BWI76_RS09345 0.48 -1.3
1,961,043 + BWI76_RS09345 0.48 +0.2
1,961,044 - BWI76_RS09345 0.48 -0.7
1,961,051 - BWI76_RS09345 0.49 -0.5
1,961,051 - BWI76_RS09345 0.49 -1.8
1,961,060 - BWI76_RS09345 0.51 +3.8
1,961,063 + BWI76_RS09345 0.51 -0.5
1,961,071 - BWI76_RS09345 0.53 -2.6
1,961,101 + BWI76_RS09345 0.57 -1.0
1,961,115 + BWI76_RS09345 0.60 +0.7
1,961,115 + BWI76_RS09345 0.60 +0.4
1,961,115 + BWI76_RS09345 0.60 -0.8
1,961,115 + BWI76_RS09345 0.60 -1.0
1,961,118 + BWI76_RS09345 0.60 -0.1
1,961,121 - BWI76_RS09345 0.61 +0.4
1,961,123 - BWI76_RS09345 0.61 -0.1
1,961,125 + BWI76_RS09345 0.61 +1.0
1,961,126 - BWI76_RS09345 0.62 +1.2
1,961,149 + BWI76_RS09345 0.65 -0.2
1,961,196 + BWI76_RS09345 0.73 +0.2
1,961,196 + BWI76_RS09345 0.73 -1.7
1,961,196 + BWI76_RS09345 0.73 +0.2
1,961,201 + BWI76_RS09345 0.74 -1.9
1,961,204 - BWI76_RS09345 0.74 -0.1
1,961,204 - BWI76_RS09345 0.74 -1.6
1,961,208 + BWI76_RS09345 0.75 -1.2
1,961,208 + BWI76_RS09345 0.75 +0.6
1,961,208 + +3.0
1,961,208 + BWI76_RS09345 0.75 -2.6
1,961,208 + BWI76_RS09345 0.75 +0.3
1,961,209 + BWI76_RS09345 0.75 +0.2
1,961,216 - BWI76_RS09345 0.76 -0.3
1,961,216 - +0.8
1,961,216 - BWI76_RS09345 0.76 -1.2
1,961,216 - BWI76_RS09345 0.76 -2.2
1,961,216 - BWI76_RS09345 0.76 +0.4
1,961,240 + BWI76_RS09345 0.80 +1.3
1,961,276 + BWI76_RS09345 0.86 -0.2
1,961,277 + BWI76_RS09345 0.86 -0.3
1,961,277 + BWI76_RS09345 0.86 -0.3
1,961,277 + BWI76_RS09345 0.86 -1.6
1,961,277 + BWI76_RS09345 0.86 -0.8
1,961,278 + BWI76_RS09345 0.87 +1.7
1,961,448 + +0.0
1,961,503 + -1.9
1,961,503 + -1.0
1,961,503 + +1.0
1,961,503 + +1.0
1,961,503 + -0.6
1,961,517 + +0.3
1,961,522 + -0.4
1,961,525 - -2.2
1,961,556 + -0.3
1,961,564 - -0.5
1,961,615 + BWI76_RS09350 0.12 -0.1
1,961,621 + BWI76_RS09350 0.12 -3.0
1,961,629 - BWI76_RS09350 0.13 -0.1
1,961,633 + BWI76_RS09350 0.13 -1.9
1,961,633 + BWI76_RS09350 0.13 -0.6
1,961,633 + BWI76_RS09350 0.13 +0.4
1,961,635 + BWI76_RS09350 0.13 +0.0
1,961,635 + BWI76_RS09350 0.13 +0.7
1,961,641 - BWI76_RS09350 0.13 -0.2
1,961,641 - BWI76_RS09350 0.13 -0.8
1,961,643 - BWI76_RS09350 0.13 +0.4
1,961,643 - BWI76_RS09350 0.13 +0.7
1,961,643 - BWI76_RS09350 0.13 -0.7
1,961,668 + BWI76_RS09350 0.14 +0.9
1,961,675 - BWI76_RS09350 0.15 +0.0
1,961,700 + BWI76_RS09350 0.16 +1.1
1,961,708 - BWI76_RS09350 0.16 +0.4
1,961,716 + BWI76_RS09350 0.17 +0.0
1,961,721 + BWI76_RS09350 0.17 -1.2
1,961,724 - BWI76_RS09350 0.17 +1.0
1,961,736 + BWI76_RS09350 0.17 +0.0
1,961,743 + BWI76_RS09350 0.18 +0.1
1,961,760 + BWI76_RS09350 0.19 -0.3

Or see this region's nucleotide sequence