Experiment: K. M5a1 KLEB23 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05945 and BWI76_RS05950 overlap by 11 nucleotides BWI76_RS05950 and BWI76_RS05955 overlap by 4 nucleotides BWI76_RS05955 and BWI76_RS05960 are separated by 13 nucleotides BWI76_RS05960 and BWI76_RS05965 overlap by 75 nucleotides
BWI76_RS05945: BWI76_RS05945 - amino acid ABC transporter permease, at 1,250,368 to 1,251,051
_RS05945
BWI76_RS05950: BWI76_RS05950 - polar amino acid ABC transporter inner membrane subunit, at 1,251,041 to 1,251,793
_RS05950
BWI76_RS05955: BWI76_RS05955 - ABC transporter, at 1,251,790 to 1,252,608
_RS05955
BWI76_RS05960: BWI76_RS05960 - cysteine transport system periplasmic binding protein, at 1,252,622 to 1,253,431
_RS05960
BWI76_RS05965: BWI76_RS05965 - hypothetical protein, at 1,253,357 to 1,253,674
_RS05965
Position (kb)
1251
1252
1253 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1250.929 kb on - strand, within BWI76_RS05945 at 1251.378 kb on - strand, within BWI76_RS05950 at 1252.054 kb on - strand, within BWI76_RS05955 at 1252.243 kb on + strand, within BWI76_RS05955 at 1252.419 kb on - strand, within BWI76_RS05955 at 1252.780 kb on + strand, within BWI76_RS05960 at 1252.804 kb on + strand, within BWI76_RS05960 at 1252.812 kb on - strand, within BWI76_RS05960 at 1252.871 kb on + strand, within BWI76_RS05960 at 1252.871 kb on + strand, within BWI76_RS05960 at 1252.879 kb on - strand, within BWI76_RS05960 at 1252.904 kb on - strand, within BWI76_RS05960 at 1253.034 kb on - strand, within BWI76_RS05960 at 1253.154 kb on - strand, within BWI76_RS05960 at 1253.193 kb on + strand, within BWI76_RS05960 at 1253.211 kb on - strand, within BWI76_RS05960 at 1253.254 kb on - strand, within BWI76_RS05960 at 1253.284 kb on + strand, within BWI76_RS05960 at 1253.364 kb on + strand at 1253.364 kb on + strand at 1253.372 kb on - strand at 1253.372 kb on - strand at 1253.372 kb on - strand at 1253.372 kb on - strand at 1253.604 kb on - strand, within BWI76_RS05965 at 1253.606 kb on - strand, within BWI76_RS05965
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 1 remove 1,250,929 - BWI76_RS05945 0.82 +0.2 1,251,378 - BWI76_RS05950 0.45 -0.5 1,252,054 - BWI76_RS05955 0.32 -1.0 1,252,243 + BWI76_RS05955 0.55 -0.2 1,252,419 - BWI76_RS05955 0.77 -2.2 1,252,780 + BWI76_RS05960 0.20 -0.3 1,252,804 + BWI76_RS05960 0.22 -1.1 1,252,812 - BWI76_RS05960 0.23 -1.4 1,252,871 + BWI76_RS05960 0.31 +0.1 1,252,871 + BWI76_RS05960 0.31 +1.2 1,252,879 - BWI76_RS05960 0.32 -0.1 1,252,904 - BWI76_RS05960 0.35 -0.4 1,253,034 - BWI76_RS05960 0.51 +0.3 1,253,154 - BWI76_RS05960 0.66 -1.3 1,253,193 + BWI76_RS05960 0.70 +0.1 1,253,211 - BWI76_RS05960 0.73 -0.7 1,253,254 - BWI76_RS05960 0.78 -0.8 1,253,284 + BWI76_RS05960 0.82 -0.6 1,253,364 + -0.9 1,253,364 + +0.4 1,253,372 - -1.3 1,253,372 - -0.0 1,253,372 - -0.4 1,253,372 - +1.9 1,253,604 - BWI76_RS05965 0.78 -0.5 1,253,606 - BWI76_RS05965 0.78 -1.4
Or see this region's nucleotide sequence