Experiment: K. M5a1 KLEB23 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27840 and BWI76_RS27845 are separated by 177 nucleotides BWI76_RS27845 and BWI76_RS27850 are separated by 245 nucleotides
BWI76_RS27840: BWI76_RS27840 - putative membrane protein, transport, at 5,773,786 to 5,774,619
_RS27840
BWI76_RS27845: BWI76_RS27845 - multidrug transporter EmrD, at 5,774,797 to 5,775,981
_RS27845
BWI76_RS27850: BWI76_RS27850 - DNA-binding transcriptional regulator DsdC, at 5,776,227 to 5,777,156
_RS27850
Position (kb) 5774
5775
5776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5773.817 kb on + strand at 5773.898 kb on + strand, within BWI76_RS27840 at 5773.929 kb on + strand, within BWI76_RS27840 at 5773.951 kb on - strand, within BWI76_RS27840 at 5774.008 kb on - strand, within BWI76_RS27840 at 5774.029 kb on - strand, within BWI76_RS27840 at 5774.184 kb on - strand, within BWI76_RS27840 at 5774.195 kb on + strand, within BWI76_RS27840 at 5774.203 kb on - strand, within BWI76_RS27840 at 5774.256 kb on + strand, within BWI76_RS27840 at 5774.297 kb on + strand, within BWI76_RS27840 at 5774.303 kb on - strand, within BWI76_RS27840 at 5774.305 kb on - strand, within BWI76_RS27840 at 5774.343 kb on - strand, within BWI76_RS27840 at 5774.461 kb on + strand, within BWI76_RS27840 at 5774.773 kb on + strand at 5774.793 kb on - strand at 5774.976 kb on + strand, within BWI76_RS27845 at 5775.074 kb on + strand, within BWI76_RS27845 at 5775.109 kb on + strand, within BWI76_RS27845 at 5775.176 kb on - strand, within BWI76_RS27845 at 5775.181 kb on + strand, within BWI76_RS27845 at 5775.183 kb on + strand, within BWI76_RS27845 at 5775.183 kb on + strand, within BWI76_RS27845 at 5775.192 kb on + strand, within BWI76_RS27845 at 5775.200 kb on - strand, within BWI76_RS27845 at 5775.200 kb on - strand, within BWI76_RS27845 at 5775.268 kb on + strand, within BWI76_RS27845 at 5775.370 kb on + strand, within BWI76_RS27845 at 5775.378 kb on - strand, within BWI76_RS27845 at 5775.403 kb on - strand, within BWI76_RS27845 at 5775.513 kb on - strand, within BWI76_RS27845 at 5776.186 kb on - strand at 5776.308 kb on + strand at 5776.323 kb on + strand, within BWI76_RS27850 at 5776.503 kb on + strand, within BWI76_RS27850 at 5776.799 kb on + strand, within BWI76_RS27850 at 5776.804 kb on + strand, within BWI76_RS27850 at 5776.804 kb on + strand, within BWI76_RS27850 at 5776.812 kb on - strand, within BWI76_RS27850
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10 remove 5,773,817 + -0.1 5,773,898 + BWI76_RS27840 0.13 +1.0 5,773,929 + BWI76_RS27840 0.17 -0.2 5,773,951 - BWI76_RS27840 0.20 -3.6 5,774,008 - BWI76_RS27840 0.27 -0.1 5,774,029 - BWI76_RS27840 0.29 +0.8 5,774,184 - BWI76_RS27840 0.48 +0.1 5,774,195 + BWI76_RS27840 0.49 +0.6 5,774,203 - BWI76_RS27840 0.50 +0.2 5,774,256 + BWI76_RS27840 0.56 +0.3 5,774,297 + BWI76_RS27840 0.61 +0.9 5,774,303 - BWI76_RS27840 0.62 -1.4 5,774,305 - BWI76_RS27840 0.62 +0.6 5,774,343 - BWI76_RS27840 0.67 -0.3 5,774,461 + BWI76_RS27840 0.81 +0.4 5,774,773 + +0.3 5,774,793 - +0.8 5,774,976 + BWI76_RS27845 0.15 +0.6 5,775,074 + BWI76_RS27845 0.23 +1.4 5,775,109 + BWI76_RS27845 0.26 +0.3 5,775,176 - BWI76_RS27845 0.32 -0.1 5,775,181 + BWI76_RS27845 0.32 +0.9 5,775,183 + BWI76_RS27845 0.33 -1.9 5,775,183 + BWI76_RS27845 0.33 +0.1 5,775,192 + BWI76_RS27845 0.33 +0.6 5,775,200 - BWI76_RS27845 0.34 -0.3 5,775,200 - BWI76_RS27845 0.34 +0.6 5,775,268 + BWI76_RS27845 0.40 +0.5 5,775,370 + BWI76_RS27845 0.48 +0.1 5,775,378 - BWI76_RS27845 0.49 +1.4 5,775,403 - BWI76_RS27845 0.51 +0.1 5,775,513 - BWI76_RS27845 0.60 +0.9 5,776,186 - +1.1 5,776,308 + +0.8 5,776,323 + BWI76_RS27850 0.10 -1.2 5,776,503 + BWI76_RS27850 0.30 -3.0 5,776,799 + BWI76_RS27850 0.62 +2.0 5,776,804 + BWI76_RS27850 0.62 -0.2 5,776,804 + BWI76_RS27850 0.62 +1.1 5,776,812 - BWI76_RS27850 0.63 -0.1
Or see this region's nucleotide sequence