Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22350

Experiment: K. M5a1 KLEB23 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22340 and BWI76_RS22345 are separated by 208 nucleotidesBWI76_RS22345 and BWI76_RS22350 are separated by 3 nucleotidesBWI76_RS22350 and BWI76_RS22355 overlap by 10 nucleotidesBWI76_RS22355 and BWI76_RS22360 are separated by 0 nucleotides BWI76_RS22340: BWI76_RS22340 - formate hydrogenlyase regulatory protein HycA, at 4,657,318 to 4,657,767 _RS22340 BWI76_RS22345: BWI76_RS22345 - hydrogenase maturation nickel metallochaperone HypA, at 4,657,976 to 4,658,326 _RS22345 BWI76_RS22350: BWI76_RS22350 - hydrogenase nickel incorporation protein HypB, at 4,658,330 to 4,659,202 _RS22350 BWI76_RS22355: BWI76_RS22355 - hydrogenase assembly chaperone, at 4,659,193 to 4,659,465 _RS22355 BWI76_RS22360: BWI76_RS22360 - hydrogenase formation protein HypD, at 4,659,466 to 4,660,587 _RS22360 Position (kb) 4658 4659 4660Strain fitness (log2 ratio) -3 -2 -1 0 1at 4657.609 kb on - strand, within BWI76_RS22340at 4657.659 kb on + strand, within BWI76_RS22340at 4657.659 kb on + strand, within BWI76_RS22340at 4657.667 kb on - strand, within BWI76_RS22340at 4657.671 kb on + strand, within BWI76_RS22340at 4657.783 kb on + strandat 4657.783 kb on + strandat 4657.989 kb on + strandat 4657.989 kb on + strandat 4657.997 kb on - strandat 4658.045 kb on + strand, within BWI76_RS22345at 4658.102 kb on + strand, within BWI76_RS22345at 4658.151 kb on + strand, within BWI76_RS22345at 4658.161 kb on + strand, within BWI76_RS22345at 4658.174 kb on - strand, within BWI76_RS22345at 4658.259 kb on - strand, within BWI76_RS22345at 4658.426 kb on + strand, within BWI76_RS22350at 4658.470 kb on + strand, within BWI76_RS22350at 4658.478 kb on - strand, within BWI76_RS22350at 4658.745 kb on - strand, within BWI76_RS22350at 4658.745 kb on - strand, within BWI76_RS22350at 4658.950 kb on + strand, within BWI76_RS22350at 4659.156 kb on + strandat 4659.163 kb on - strandat 4659.254 kb on - strand, within BWI76_RS22355at 4659.334 kb on + strand, within BWI76_RS22355at 4659.936 kb on - strand, within BWI76_RS22360at 4660.068 kb on + strand, within BWI76_RS22360at 4660.101 kb on - strand, within BWI76_RS22360at 4660.135 kb on - strand, within BWI76_RS22360at 4660.196 kb on - strand, within BWI76_RS22360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
remove
4,657,609 - BWI76_RS22340 0.65 -0.2
4,657,659 + BWI76_RS22340 0.76 +1.0
4,657,659 + BWI76_RS22340 0.76 +0.5
4,657,667 - BWI76_RS22340 0.78 +1.2
4,657,671 + BWI76_RS22340 0.78 +0.0
4,657,783 + -0.6
4,657,783 + -0.6
4,657,989 + +1.7
4,657,989 + -3.2
4,657,997 - +0.9
4,658,045 + BWI76_RS22345 0.20 -1.7
4,658,102 + BWI76_RS22345 0.36 +0.1
4,658,151 + BWI76_RS22345 0.50 +0.2
4,658,161 + BWI76_RS22345 0.53 +0.0
4,658,174 - BWI76_RS22345 0.56 +0.5
4,658,259 - BWI76_RS22345 0.81 +0.3
4,658,426 + BWI76_RS22350 0.11 -1.3
4,658,470 + BWI76_RS22350 0.16 -1.1
4,658,478 - BWI76_RS22350 0.17 +0.8
4,658,745 - BWI76_RS22350 0.48 -2.6
4,658,745 - BWI76_RS22350 0.48 -0.8
4,658,950 + BWI76_RS22350 0.71 -1.7
4,659,156 + -1.4
4,659,163 - +1.5
4,659,254 - BWI76_RS22355 0.22 +0.8
4,659,334 + BWI76_RS22355 0.52 +1.1
4,659,936 - BWI76_RS22360 0.42 +0.3
4,660,068 + BWI76_RS22360 0.54 -0.4
4,660,101 - BWI76_RS22360 0.57 +0.1
4,660,135 - BWI76_RS22360 0.60 +0.3
4,660,196 - BWI76_RS22360 0.65 +0.3

Or see this region's nucleotide sequence