Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18740

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18730 and BWI76_RS18735 are separated by 114 nucleotidesBWI76_RS18735 and BWI76_RS18740 are separated by 49 nucleotidesBWI76_RS18740 and BWI76_RS18745 are separated by 185 nucleotides BWI76_RS18730: BWI76_RS18730 - LysR family transcriptional regulator, at 3,883,243 to 3,884,160 _RS18730 BWI76_RS18735: BWI76_RS18735 - tautomerase family protein, at 3,884,275 to 3,884,664 _RS18735 BWI76_RS18740: BWI76_RS18740 - HPP family protein, at 3,884,714 to 3,885,445 _RS18740 BWI76_RS18745: BWI76_RS18745 - adenosylhomocysteinase, at 3,885,631 to 3,886,740 _RS18745 Position (kb) 3884 3885 3886Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3884.076 kb on - strandat 3884.224 kb on + strandat 3884.470 kb on - strand, within BWI76_RS18735at 3884.485 kb on + strand, within BWI76_RS18735at 3884.489 kb on + strand, within BWI76_RS18735at 3884.492 kb on - strand, within BWI76_RS18735at 3884.667 kb on - strandat 3884.688 kb on + strandat 3884.876 kb on - strand, within BWI76_RS18740at 3884.876 kb on - strand, within BWI76_RS18740at 3885.111 kb on + strand, within BWI76_RS18740at 3885.158 kb on + strand, within BWI76_RS18740at 3885.192 kb on + strand, within BWI76_RS18740at 3885.591 kb on - strandat 3885.673 kb on + strandat 3885.741 kb on - strandat 3885.838 kb on + strand, within BWI76_RS18745at 3886.136 kb on - strand, within BWI76_RS18745

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,884,076 - -1.1
3,884,224 + +0.3
3,884,470 - BWI76_RS18735 0.50 +0.4
3,884,485 + BWI76_RS18735 0.54 +1.5
3,884,489 + BWI76_RS18735 0.55 -0.9
3,884,492 - BWI76_RS18735 0.56 +0.7
3,884,667 - +0.4
3,884,688 + -2.4
3,884,876 - BWI76_RS18740 0.22 -3.2
3,884,876 - BWI76_RS18740 0.22 -2.3
3,885,111 + BWI76_RS18740 0.54 -4.4
3,885,158 + BWI76_RS18740 0.61 +0.1
3,885,192 + BWI76_RS18740 0.65 -0.3
3,885,591 - -0.4
3,885,673 + -2.2
3,885,741 - +1.2
3,885,838 + BWI76_RS18745 0.19 -3.0
3,886,136 - BWI76_RS18745 0.45 -0.2

Or see this region's nucleotide sequence